Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V1L70_RS07615 Genome accession   NZ_CP144278
Coordinates   1627933..1628559 (+) Length   208 a.a.
NCBI ID   WP_032677817.1    Uniprot ID   -
Organism   Enterobacter ludwigii strain T977     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1622933..1633559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1L70_RS07595 (V1L70_07595) - 1623327..1625087 (-) 1761 WP_331706441.1 Lon protease family protein -
  V1L70_RS07600 (V1L70_07600) matP 1625274..1625726 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  V1L70_RS07605 (V1L70_07605) ompA 1625796..1626851 (-) 1056 WP_020884794.1 porin OmpA -
  V1L70_RS07610 (V1L70_07610) sulA 1627206..1627715 (-) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  V1L70_RS07615 (V1L70_07615) sxy/tfoX 1627933..1628559 (+) 627 WP_032677817.1 TfoX/Sxy family DNA transformation protein Regulator
  V1L70_RS07620 (V1L70_07620) yccS 1628516..1630678 (-) 2163 WP_020884791.1 YccS family putative transporter -
  V1L70_RS07625 (V1L70_07625) - 1630698..1631144 (-) 447 WP_014169434.1 YccF domain-containing protein -
  V1L70_RS07630 (V1L70_07630) helD 1631268..1633322 (+) 2055 WP_047357173.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23863.40 Da        Isoelectric Point: 9.4993

>NTDB_id=933254 V1L70_RS07615 WP_032677817.1 1627933..1628559(+) (sxy/tfoX) [Enterobacter ludwigii strain T977]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITNEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=933254 V1L70_RS07615 WP_032677817.1 1627933..1628559(+) (sxy/tfoX) [Enterobacter ludwigii strain T977]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGACGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTCTTAACCCTCATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACTTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTAATGAAGAGACGCTGCGGGAGCTGGGTGCCCGTGCGAGCTGGCTAAAGATGCGGGCGAAAAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCGCTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.621

97.596

0.572