Detailed information NTG0933250

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACDW37_RS06765
• Genome accession: NZ_CP167985
• Coordinates: 1439118..1440122 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 0502d1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1434118..1445122

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDW37_RS06735 (ACDW37_06735)	fghA	1434210..1435061 (+)	852	WP_033942610.1	S-formylglutathione hydrolase	-
ACDW37_RS06740 (ACDW37_06740)	ispF	1435132..1435605 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACDW37_RS06745 (ACDW37_06745)	truD	1435602..1436669 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
ACDW37_RS06750 (ACDW37_06750)	surE	1436657..1437406 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACDW37_RS06755 (ACDW37_06755)	-	1437439..1438074 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACDW37_RS06760 (ACDW37_06760)	-	1438120..1439013 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACDW37_RS06765 (ACDW37_06765)	rpoS	1439118..1440122 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACDW37_RS06770 (ACDW37_06770)	fdxA	1440549..1440872 (-)	324	WP_003119354.1	ferredoxin FdxA	-
ACDW37_RS06775 (ACDW37_06775)	mutS	1440939..1443518 (-)	2580	WP_203305954.1	DNA mismatch repair protein MutS	-
ACDW37_RS06780 (ACDW37_06780)	-	1443578..1444552 (-)	975	WP_014602574.1	tyrosine-type recombinase/integrase	-
ACDW37_RS06785 (ACDW37_06785)	-	1444562..1444771 (-)	210	WP_071538228.1	DUF4224 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=933250 ACDW37_RS06765 WP_003113871.1 1439118..1440122(+) (rpoS) [Pseudomonas aeruginosa strain 0502d1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=933250 ACDW37_RS06765 WP_003113871.1 1439118..1440122(+) (rpoS) [Pseudomonas aeruginosa strain 0502d1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653