Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8605_RS06350 Genome accession   NZ_AP028358
Coordinates   1223621..1224115 (+) Length   164 a.a.
NCBI ID   WP_002855991.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10569     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1218621..1229115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8605_RS06335 (B10569_12720) - 1220007..1221185 (-) 1179 WP_002882219.1 metal-dependent hydrolase -
  R8605_RS06340 (B10569_12730) gpsA 1221195..1222091 (-) 897 WP_074468983.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8605_RS06345 (B10569_12740) gatB 1222088..1223506 (-) 1419 WP_308042893.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8605_RS06350 (B10569_12750) luxS 1223621..1224115 (+) 495 WP_002855991.1 S-ribosylhomocysteine lyase Regulator
  R8605_RS06355 (B10569_12760) - 1224426..1225418 (+) 993 WP_002882217.1 isopenicillin N synthase family dioxygenase -
  R8605_RS06360 (B10569_12770) - 1225429..1226199 (+) 771 WP_002882216.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8605_RS06365 (B10569_12780) metE 1226211..1228475 (+) 2265 WP_308042892.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18258.18 Da        Isoelectric Point: 5.9947

>NTDB_id=93318 R8605_RS06350 WP_002855991.1 1223621..1224115(+) (luxS) [Campylobacter jejuni strain BCH-10569]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCVPNKDIMSEKGTHTLEHLFAGFMRDHLNSDSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=93318 R8605_RS06350 WP_002855991.1 1223621..1224115(+) (luxS) [Campylobacter jejuni strain BCH-10569]
ATGCCATTATTAGATAGTTTTAAAGTTGATCATACCAAAATGCCAGCGCCCGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCGTACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAGATTCGGTTGAAATCATTGATATTTCACCT
ATGGGCTGTCGTACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGTGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment