Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACDW36_RS10055 Genome accession   NZ_CP167984
Coordinates   2134614..2134943 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 0304d2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2129614..2139943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW36_RS10040 (ACDW36_10040) - 2130343..2131287 (+) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -
  ACDW36_RS10045 (ACDW36_10045) - 2131388..2132413 (+) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  ACDW36_RS10050 (ACDW36_10050) - 2132426..2134423 (+) 1998 WP_372437015.1 polysaccharide biosynthesis protein -
  ACDW36_RS10055 (ACDW36_10055) comEA/comE1 2134614..2134943 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  ACDW36_RS10065 (ACDW36_10065) - 2135160..2136356 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  ACDW36_RS10070 (ACDW36_10070) uvrB 2136544..2138556 (+) 2013 WP_023095364.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=933155 ACDW36_RS10055 WP_003091430.1 2134614..2134943(+) (comEA/comE1) [Pseudomonas aeruginosa strain 0304d2]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=933155 ACDW36_RS10055 WP_003091430.1 2134614..2134943(+) (comEA/comE1) [Pseudomonas aeruginosa strain 0304d2]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385