Detailed information NTG0933150

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACDW36_RS07550
• Genome accession: NZ_CP167984
• Coordinates: 1601618..1602622 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 0304d2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1596618..1607622

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDW36_RS07520 (ACDW36_07520)	fghA	1596710..1597561 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
ACDW36_RS07525 (ACDW36_07525)	ispF	1597632..1598105 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACDW36_RS07530 (ACDW36_07530)	truD	1598102..1599169 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
ACDW36_RS07535 (ACDW36_07535)	surE	1599157..1599906 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACDW36_RS07540 (ACDW36_07540)	-	1599939..1600574 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACDW36_RS07545 (ACDW36_07545)	-	1600620..1601513 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACDW36_RS07550 (ACDW36_07550)	rpoS	1601618..1602622 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACDW36_RS07555 (ACDW36_07555)	fdxA	1603049..1603372 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACDW36_RS07560 (ACDW36_07560)	mutS	1603439..1606006 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
ACDW36_RS07565 (ACDW36_07565)	-	1606132..1607139 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=933150 ACDW36_RS07550 WP_003113871.1 1601618..1602622(+) (rpoS) [Pseudomonas aeruginosa strain 0304d2]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=933150 ACDW36_RS07550 WP_003113871.1 1601618..1602622(+) (rpoS) [Pseudomonas aeruginosa strain 0304d2]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653