Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   V3434_RS04750 Genome accession   NZ_CP144271
Coordinates   936102..937739 (-) Length   545 a.a.
NCBI ID   WP_031912755.1    Uniprot ID   -
Organism   Staphylococcus aureus strain LA31     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 929337..944717 936102..937739 within 0


Gene organization within MGE regions


Location: 929337..944717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3434_RS04715 (V3434_04715) mecA 929337..931346 (-) 2010 WP_001801873.1 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -
  V3434_RS04720 (V3434_04720) - 931443..932429 (+) 987 WP_350950092.1 M56 family metallopeptidase -
  V3434_RS04725 (V3434_04725) - 932401..932661 (+) 261 WP_001549961.1 type I restriction enzyme endonuclease domain-containing protein -
  V3434_RS04730 (V3434_04730) - 932652..934259 (-) 1608 Protein_924 IS1182 family transposase -
  V3434_RS04735 (V3434_04735) - 934311..934817 (-) 507 WP_001092189.1 DUF1643 domain-containing protein -
  V3434_RS04740 (V3434_04740) - 934832..935143 (-) 312 WP_000700851.1 DUF960 family protein -
  V3434_RS04745 (V3434_04745) - 935230..935580 (-) 351 WP_000849672.1 SAUGI family uracil-DNA glycosylase inhibitor -
  V3434_RS04750 (V3434_04750) ccrB 936102..937739 (-) 1638 WP_031912755.1 recombinase family protein Machinery gene
  V3434_RS04755 (V3434_04755) ccrA 937761..939110 (-) 1350 WP_000815652.1 recombinase family protein Machinery gene
  V3434_RS04760 (V3434_04760) - 939344..941131 (-) 1788 WP_000122621.1 DUF927 domain-containing protein -
  V3434_RS04765 (V3434_04765) - 941131..941421 (-) 291 WP_001036437.1 hypothetical protein -
  V3434_RS04770 (V3434_04770) - 941560..942609 (+) 1050 WP_000613248.1 hypothetical protein -
  V3434_RS04775 (V3434_04775) - 943227..944717 (+) 1491 WP_000554504.1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 545 a.a.        Molecular weight: 62967.16 Da        Isoelectric Point: 9.9805

>NTDB_id=933147 V3434_RS04750 WP_031912755.1 936102..937739(-) (ccrB) [Staphylococcus aureus strain LA31]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKEGNIDCVM
IYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTTNT
LKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVARVNQENKVDGAALHHDIAYKQQ
QYDEVQTKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKSLFDAKQISKLLQHIFQDIKHMEKS
RLKALYLSVIDRINIRKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1638 bp        

>NTDB_id=933147 V3434_RS04750 WP_031912755.1 936102..937739(-) (ccrB) [Staphylococcus aureus strain LA31]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAAGTTAAAGATATATACGCTGATCGTGGTA
TTTCAGGTAAATCTATGAACAGACCTGAGCTCCAACGTATGTTGAAAGATGCAAAAGAAGGCAATATAGATTGTGTTATG
ATCTACAAAACAAACCGATTAGCTCGTAATACATCGGATCTTCTGAAAATCGTCGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTTTATCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTTATGGGGCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTACCACTAGGTTATGACAAAATACCAGATAGTAAACACGAGCTAATGATTAACCAACATGAAGCTAATATTGTAAAATA
TATATTCGAGTCCTATGCCAAAGGACATGGCTATCGTAAAATAGCCAATGCATTGAATCACAAAGGCTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTTCATGGTAAAGGAACGA
ATCTGCTTACAGGCATTATCCATTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACAACGAATACAACGAATACA
CTTAAAGATGGGACCAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGTTCGGC
AAACAGTGTAAGAGCTGATGTGATTGAAGATTATGTAATGAAGCAAATACTCGAAATAGTCAAAAGTGATAAAGTCATTC
AACGCGTTGTAGCACGTGTTAATCAAGAAAATAAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAA
CAATATGATGAAGTACAAACCAAACTAAATAACTTGATTAAAACCATAGAGGATAATCCGGACTTAACATCAGTAATCAG
ACCAAGTATTCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAG
ATAAGTCTTTATTTGATGCCAAACAAATCAGTAAACTATTACAACACATCTTTCAAGATATTAAGCACATGGAAAAATCT
CGACTCAAAGCATTGTACCTATCAGTGATTGATCGTATTAATATTAGAAAAGATGGTAATCATAAAAAACAATTCTATGT
CACACTCAAACTTAATAACGAAATCATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGT
CTTTATTTTTGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-359)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

96.881

100

0.969