Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACDW36_RS02175 Genome accession   NZ_CP167984
Coordinates   493434..494795 (+) Length   453 a.a.
NCBI ID   WP_009877389.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 0304d2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 488434..499795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW36_RS02155 (ACDW36_02155) - 489271..489837 (-) 567 WP_003084491.1 hypothetical protein -
  ACDW36_RS02160 (ACDW36_02160) rsmD 489840..490436 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACDW36_RS02165 (ACDW36_02165) - 490436..491923 (-) 1488 WP_023095110.1 pitrilysin family protein -
  ACDW36_RS02170 (ACDW36_02170) - 491916..493313 (-) 1398 WP_003084498.1 pitrilysin family protein -
  ACDW36_RS02175 (ACDW36_02175) pilA 493434..494795 (+) 1362 WP_009877389.1 signal recognition particle-docking protein FtsY Machinery gene
  ACDW36_RS02180 (ACDW36_02180) ftsE 494792..495463 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  ACDW36_RS02185 (ACDW36_02185) ftsX 495463..496470 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  ACDW36_RS02190 (ACDW36_02190) rpoH 496584..497438 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  ACDW36_RS02195 (ACDW36_02195) - 497503..498108 (+) 606 WP_003084511.1 hypothetical protein -
  ACDW36_RS02200 (ACDW36_02200) mtgA 498113..498844 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  ACDW36_RS02205 (ACDW36_02205) - 498881..499258 (+) 378 WP_023095112.1 DUF423 domain-containing protein -
  ACDW36_RS02210 (ACDW36_02210) thiS 499361..499561 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48165.59 Da        Isoelectric Point: 4.5525

>NTDB_id=933135 ACDW36_RS02175 WP_009877389.1 493434..494795(+) (pilA) [Pseudomonas aeruginosa strain 0304d2]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSA
SIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQ
VDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFD
AVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALT
KLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=933135 ACDW36_RS02175 WP_009877389.1 493434..494795(+) (pilA) [Pseudomonas aeruginosa strain 0304d2]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCCGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCG
CCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGGCTGTCCAAGACCAGCGCC
AGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCG
CCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGC
TGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAG
GTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCT
GGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGT
TGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGAC
GCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCT
GATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCG
ACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACC
AAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGT
CGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCAT
GA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(248-447)

SRP54-type protein, helical bundle domain (SRP54_N)

(163-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.126

96.026

0.453