Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   Aeroheme_RS02090 Genome accession   NZ_CP144265
Coordinates   427318..428757 (+) Length   479 a.a.
NCBI ID   WP_106885626.1    Uniprot ID   -
Organism   Aeromonas sp. DSM 116730     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 422318..433757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aeroheme_RS02060 (Aeroheme_00418) mlaF 422896..423696 (-) 801 WP_025328535.1 phospholipid ABC transporter ATP-binding protein MlaF -
  Aeroheme_RS02065 (Aeroheme_00419) - 423903..424898 (+) 996 WP_025328534.1 KpsF/GutQ family sugar-phosphate isomerase -
  Aeroheme_RS02070 (Aeroheme_00420) kdsC 424898..425452 (+) 555 WP_205642598.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  Aeroheme_RS02075 (Aeroheme_00421) lptC 425449..426009 (+) 561 WP_042649050.1 LPS export ABC transporter periplasmic protein LptC -
  Aeroheme_RS02080 (Aeroheme_00422) lptA 425996..426514 (+) 519 WP_042649049.1 lipopolysaccharide transport periplasmic protein LptA -
  Aeroheme_RS02085 (Aeroheme_00423) lptB 426527..427252 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  Aeroheme_RS02090 (Aeroheme_00424) rpoN/rpoN1 427318..428757 (+) 1440 WP_106885626.1 RNA polymerase factor sigma-54 Machinery gene
  Aeroheme_RS02095 (Aeroheme_00425) hpf 428778..429065 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  Aeroheme_RS02100 (Aeroheme_00426) ptsN 429068..429514 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  Aeroheme_RS02105 (Aeroheme_00427) rapZ 429555..430421 (+) 867 WP_139438909.1 RNase adapter RapZ -
  Aeroheme_RS02110 (Aeroheme_00428) npr 430442..430714 (+) 273 WP_005331359.1 PTS phosphocarrier protein NPr -
  Aeroheme_RS02115 (Aeroheme_00429) - 430733..432637 (-) 1905 WP_289980654.1 BglG family transcription antiterminator -
  Aeroheme_RS02120 (Aeroheme_00430) dagF 432744..433484 (-) 741 WP_411166613.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53778.73 Da        Isoelectric Point: 4.4177

>NTDB_id=933064 Aeroheme_RS02090 WP_106885626.1 427318..428757(+) (rpoN/rpoN1) [Aeromonas sp. DSM 116730]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSPIEPQDASQLDSSDAMAQDKMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEEVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=933064 Aeroheme_RS02090 WP_106885626.1 427318..428757(+) (rpoN/rpoN1) [Aeromonas sp. DSM 116730]
ATGAAGCCGACATTACAGTTGCGCCTCGGTCAGTCACTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAATAACCCCTTGCTGGAGCAGGAGGAGAATGAGG
CGCAGGAAACCAGCCCGATAGAGCCCCAGGACGCCAGTCAACTCGACTCCAGCGACGCCATGGCGCAGGACAAGATGCCG
GATGAACTGCCGGTGGACACCACCTGGGATGAGGTCTACTCCGCCGGTACGGCCCAGAGCGCCGGCCCCATCCATGATGG
GGAAGACAGCGTCTATCAGGGGGAAACCACCGAGAACCTGCAGGACTATCTGCTGTGGCAGATGCGCTTGACGCCGTTCA
GCGATCTGGATGCCGCCATCGCCCTCGCCATCATCGATGCCATCGATGAGTCCGGCTACCTGACCGTCTCTCTCGAAGAT
ATTCAGGCTGCAGTCAGCAGTGAAGAGGTAGAAGTTGAACTGGATGAAGTGGAAGCCGTGCTCAAGCGAGTGCAGCATTT
CGATCCGGTTGGCATAGCCGCGCGCTCGGTGCAGGAGTGTCTGCTGATCCAGCTTGGCCAGTACTCGCCGGATCTGCCCT
GGCTCAATGAGGCAAGGGAGGTGATCCGCGAGCACATGGATCTGCTCGGCAACCGCGACTACCGCACCCTGGCACGTAAG
ACCCGGCTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCCAGACCCGGCAATGGCATCAT
CCAGAGTGAATCGCAATACGTGATCCCGGATGTATCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAGCTCAACCCGG
ATTCGGCGCCGCGCATTCGTGTCAACGAGGCCTATGCGGCCATGGCACGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGCTCCCATCTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATAGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCCG
AGGCGGTGGAGATGCACGAGTCGACGATTTCACGGGTGACGACCCAGAAGTACATGCATACGCCCCGTGGCATCTTTGAA
CTGAAGTTTTTTTTCTCCAGTCATGTCAACACGGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGTGCCCTGATCAA
GAAGCTGGTGACGGCCGAAAACCCGGCCAAACCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.471

100

0.495