Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACDW35_RS09470 Genome accession   NZ_CP167983
Coordinates   2024390..2024719 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain 0102d1_7     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2019390..2029719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW35_RS09455 (ACDW35_09455) - 2019788..2020741 (+) 954 WP_003138480.1 SDR family oxidoreductase -
  ACDW35_RS09460 (ACDW35_09460) - 2020741..2021757 (+) 1017 WP_003138482.1 glycosyltransferase family 4 protein -
  ACDW35_RS09465 (ACDW35_09465) - 2022202..2024199 (+) 1998 WP_003138484.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ACDW35_RS09470 (ACDW35_09470) comEA/comE1 2024390..2024719 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  ACDW35_RS09480 (ACDW35_09480) - 2024936..2026132 (-) 1197 WP_003110849.1 amino acid aminotransferase -
  ACDW35_RS09485 (ACDW35_09485) uvrB 2026320..2028332 (+) 2013 WP_003138489.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=933056 ACDW35_RS09470 WP_003138486.1 2024390..2024719(+) (comEA/comE1) [Pseudomonas aeruginosa strain 0102d1_7]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=933056 ACDW35_RS09470 WP_003138486.1 2024390..2024719(+) (comEA/comE1) [Pseudomonas aeruginosa strain 0102d1_7]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385