Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   R8605_RS03075 Genome accession   NZ_AP028358
Coordinates   589087..589470 (+) Length   127 a.a.
NCBI ID   WP_308042672.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10569     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584087..594470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8605_RS03055 (B10569_06030) - 584166..586100 (-) 1935 WP_107701835.1 RNB domain-containing ribonuclease -
  R8605_RS03060 (B10569_06040) ilvC 586219..587241 (+) 1023 WP_308042675.1 ketol-acid reductoisomerase -
  R8605_RS03065 (B10569_06050) - 587245..588327 (+) 1083 WP_002854844.1 divergent polysaccharide deacetylase family protein -
  R8605_RS03070 (B10569_06060) dprA 588317..589090 (+) 774 WP_002855109.1 DNA-processing protein DprA Machinery gene
  R8605_RS03075 (B10569_06070) dprB 589087..589470 (+) 384 WP_308042672.1 Holliday junction resolvase RuvX Machinery gene
  R8605_RS03080 (B10569_06080) - 589499..590338 (+) 840 WP_079263865.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8605_RS03085 (B10569_06090) msrA 590514..591011 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8605_RS03090 (B10569_06100) ppa 591052..591570 (-) 519 WP_002871349.1 inorganic diphosphatase -
  R8605_RS03095 (B10569_06110) adk 591580..592158 (-) 579 WP_002872374.1 adenylate kinase -
  R8605_RS03100 (B10569_06120) aspS 592155..593906 (-) 1752 WP_052801818.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14189.70 Da        Isoelectric Point: 8.4950

>NTDB_id=93304 R8605_RS03075 WP_308042672.1 589087..589470(+) (dprB) [Campylobacter jejuni strain BCH-10569]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKSGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIADTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=93304 R8605_RS03075 WP_308042672.1 589087..589470(+) (dprB) [Campylobacter jejuni strain BCH-10569]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGAGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCATAGCCGATACGCGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.094

100

0.441

Multiple sequence alignment