Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   MWM02_RS14840 Genome accession   NZ_AP025627
Coordinates   2941596..2943410 (-) Length   604 a.a.
NCBI ID   WP_064552455.1    Uniprot ID   A0A1B7KPL4
Organism   Parageobacillus sp. KH3-4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2936596..2948410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM02_RS14805 (PspKH34_29330) - 2937376..2938008 (-) 633 WP_064552448.1 GTP pyrophosphokinase family protein -
  MWM02_RS14810 (PspKH34_29340) - 2938025..2938399 (-) 375 WP_244402323.1 hypothetical protein -
  MWM02_RS14815 (PspKH34_29350) - 2938529..2939119 (+) 591 WP_064552450.1 CYTH domain-containing protein -
  MWM02_RS14820 (PspKH34_29360) - 2939119..2939721 (+) 603 WP_244402324.1 lytic transglycosylase domain-containing protein -
  MWM02_RS14825 (PspKH34_29370) - 2939827..2940240 (+) 414 WP_064552452.1 globin -
  MWM02_RS14830 (PspKH34_29380) spxH 2940233..2941126 (+) 894 WP_064552453.1 ClpXP adapter protein SpxH -
  MWM02_RS14835 (PspKH34_29390) - 2941381..2941575 (+) 195 WP_064552454.1 hypothetical protein -
  MWM02_RS14840 (PspKH34_29400) pepF 2941596..2943410 (-) 1815 WP_064552455.1 oligoendopeptidase F Regulator
  MWM02_RS14845 (PspKH34_29410) - 2943493..2944737 (-) 1245 WP_244402325.1 competence protein CoiA family protein -
  MWM02_RS14850 (PspKH34_29420) cls 2944850..2946358 (-) 1509 WP_244402326.1 cardiolipin synthase -
  MWM02_RS14855 (PspKH34_29430) mecA 2946437..2947114 (-) 678 WP_064552458.1 adaptor protein MecA -
  MWM02_RS14860 (PspKH34_29440) - 2947328..2947996 (+) 669 WP_064552459.1 TerC family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 70146.26 Da        Isoelectric Point: 4.9294

>NTDB_id=93300 MWM02_RS14840 WP_064552455.1 2941596..2943410(-) (pepF) [Parageobacillus sp. KH3-4]
MEEKKTKKSLPLRSEIPVEETWRLEDIFPTDEAWEQEFQEVKKMIPKLSDYQGRLGESADTLYEALQYQDEISMRLGKLY
TYAHMRYDQDTTNAFYQGLNDRAMSLYSEASSAMAFIVPEILAIDEAKLRSFLEEKKELKLYEHALDEINRQRPHVLSAE
EEAILAQAAEVMQAPSTTFGMLNNADLTFPTIIDENGEEVEVTHGRFIRFLESPDRRVRHDAFKAVYETYEKYKNTFAST
LAGAVKKDNFFARVRRYKSAREAALSSNNIPESVYDNLIETIHEHLPLLHRYVRLRKKALGLDELHMYDLYTPLVQDVKM
EVTYEEAKEYMLKGLAPLGDEYIRIVKEGLENRWVDVRENKGKRSGAYSSGAYGTNPYILLNWQDNVNNLFTLVHEFGHS
VHSYYTRKTQPYPYGDYSIFVAEVASTCNEALLSDYLLKTIDDEKQRLYLLNHYLEGFRGTVFRQTMFAEFEHMIHIKAQ
EGEALTADSLTSMYYELNKKYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSRQILEEGEPAVKRYIEFL
KAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEMERMLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=93300 MWM02_RS14840 WP_064552455.1 2941596..2943410(-) (pepF) [Parageobacillus sp. KH3-4]
ATGGAAGAAAAGAAAACAAAAAAATCGTTACCATTACGAAGTGAAATTCCGGTAGAAGAAACGTGGCGTTTAGAGGACAT
TTTCCCAACGGATGAAGCATGGGAGCAAGAATTTCAAGAAGTGAAAAAAATGATCCCGAAATTATCGGATTATCAAGGAA
GGTTGGGAGAATCGGCAGATACGTTATACGAAGCGCTGCAATACCAAGATGAGATATCGATGCGTCTCGGCAAGCTGTAT
ACATATGCGCATATGCGTTATGACCAAGATACGACAAACGCTTTTTATCAAGGGCTGAACGATCGAGCAATGAGCCTTTA
CAGCGAAGCGTCTAGCGCGATGGCATTTATCGTTCCGGAAATTTTGGCGATCGATGAGGCGAAATTACGTTCGTTTTTAG
AAGAGAAAAAAGAATTAAAGCTGTATGAACACGCTTTAGATGAAATTAACCGCCAGCGTCCGCATGTGTTGTCCGCCGAA
GAAGAAGCGATCCTTGCCCAGGCGGCGGAAGTCATGCAAGCACCTTCGACTACATTCGGCATGCTGAATAACGCCGATTT
AACGTTCCCGACAATTATCGATGAAAATGGGGAAGAAGTGGAAGTGACGCACGGTCGCTTTATTCGCTTTTTAGAAAGCC
CGGACCGCCGCGTGCGGCATGATGCGTTTAAAGCGGTATATGAGACGTACGAGAAGTATAAAAATACGTTTGCCAGCACG
CTCGCCGGCGCGGTGAAAAAAGACAACTTTTTCGCGCGCGTCCGCCGCTATAAATCGGCGCGGGAAGCGGCGTTAAGCAG
CAATAACATTCCCGAAAGTGTATACGATAATTTGATCGAAACGATTCATGAGCATTTGCCGCTATTGCATCGCTACGTTC
GTTTGCGCAAAAAAGCGCTTGGGCTTGATGAACTGCACATGTATGATTTATACACTCCGCTTGTGCAAGATGTAAAAATG
GAAGTAACGTATGAAGAAGCGAAAGAATACATGTTAAAAGGGCTTGCTCCGCTCGGCGACGAATATATTCGCATCGTCAA
GGAAGGCCTGGAAAACCGCTGGGTAGACGTGCGCGAAAACAAAGGGAAACGAAGCGGCGCCTATTCATCAGGAGCGTATG
GAACAAATCCGTATATTTTGCTTAATTGGCAAGATAACGTCAATAACTTGTTTACGCTGGTCCATGAATTCGGCCATTCG
GTGCATAGCTATTACACGCGCAAAACGCAGCCGTATCCGTATGGTGATTATTCTATTTTTGTCGCTGAAGTTGCATCAAC
ATGCAACGAAGCGCTATTAAGTGATTATTTATTGAAAACGATCGATGACGAGAAACAACGGTTATATTTGCTTAACCATT
ATTTAGAAGGGTTCCGCGGAACGGTCTTTCGGCAAACGATGTTTGCCGAGTTTGAACATATGATTCATATCAAGGCGCAG
GAAGGCGAAGCGCTCACAGCTGATTCATTGACTTCCATGTATTACGAATTAAACAAAAAATATTTCGGCGATGATATTGT
CGTCGATAAGGAAATTGGATTAGAATGGGCGCGTATTCCGCATTTTTACTACAATTATTATGTTTATCAATACGCAACTG
GCTTTAGCGCAGCGACCGCACTAAGCAGACAAATATTAGAAGAAGGGGAACCGGCCGTGAAGCGCTATATTGAGTTTTTA
AAGGCAGGCAGCTCTGATTATCCAATTGAGGTGTTGAAAAAAGCGGGAGTAGATATGACGAGCGCGGAACCGATCCGCCA
GGCTTGCCAAGTATTCGCGGAAAAACTGGAAGAAATGGAACGGATGTTGTCGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B7KPL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.1

97.848

0.5

Multiple sequence alignment