Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   V3O03_RS01590 Genome accession   NZ_CP144252
Coordinates   340478..340951 (+) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain YFY27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335478..345951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3O03_RS01565 (V3O03_01565) - 335942..338047 (-) 2106 WP_001117590.1 HD domain-containing protein -
  V3O03_RS01570 (V3O03_01570) - 338087..338216 (-) 130 Protein_300 hypothetical protein -
  V3O03_RS01575 (V3O03_01575) rpoZ 338255..338533 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  V3O03_RS01580 (V3O03_01580) gmk 338606..339235 (-) 630 WP_000015937.1 guanylate kinase -
  V3O03_RS01585 (V3O03_01585) ispH 339358..340308 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  V3O03_RS01590 (V3O03_01590) fimU 340478..340951 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  V3O03_RS01595 (V3O03_01595) pilV 340945..341505 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  V3O03_RS01600 (V3O03_01600) pilW 341506..342507 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  V3O03_RS01605 (V3O03_01605) pilX 342504..343322 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=932975 V3O03_RS01590 WP_001214061.1 340478..340951(+) (fimU) [Acinetobacter baumannii strain YFY27]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=932975 V3O03_RS01590 WP_001214061.1 340478..340951(+) (fimU) [Acinetobacter baumannii strain YFY27]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987