Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MWM02_RS05970 Genome accession   NZ_AP025627
Coordinates   1153026..1154747 (+) Length   573 a.a.
NCBI ID   WP_244403155.1    Uniprot ID   -
Organism   Parageobacillus sp. KH3-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1148026..1159747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM02_RS05945 (PspKH34_11380) - 1148426..1148659 (+) 234 WP_064549937.1 exodeoxyribonuclease VII small subunit -
  MWM02_RS05950 (PspKH34_11390) - 1148663..1149556 (+) 894 WP_064549938.1 polyprenyl synthetase family protein -
  MWM02_RS05955 (PspKH34_11400) dxs 1149776..1151668 (+) 1893 WP_244403154.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MWM02_RS05960 (PspKH34_11410) - 1151672..1152502 (+) 831 WP_064549940.1 TlyA family RNA methyltransferase -
  MWM02_RS05965 (PspKH34_11420) argR 1152557..1153006 (+) 450 WP_064549941.1 transcriptional regulator ArgR -
  MWM02_RS05970 (PspKH34_11430) recN 1153026..1154747 (+) 1722 WP_244403155.1 DNA repair protein RecN Machinery gene
  MWM02_RS05975 (PspKH34_11440) spoIVB 1154874..1156166 (+) 1293 WP_064549943.1 SpoIVB peptidase -
  MWM02_RS05980 (PspKH34_11450) spo0A 1156481..1157260 (+) 780 WP_064549944.1 sporulation transcription factor Spo0A -
  MWM02_RS05985 (PspKH34_11460) - 1157451..1157741 (+) 291 WP_244403597.1 site-specific integrase -
  MWM02_RS05990 - 1158632..1159261 (-) 630 Protein_1136 IS3 family transposase -
  MWM02_RS05995 (PspKH34_11480) - 1159368..1159514 (-) 147 WP_064549959.1 YycC family protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64604.71 Da        Isoelectric Point: 4.7533

>NTDB_id=93290 MWM02_RS05970 WP_244403155.1 1153026..1154747(+) (recN) [Parageobacillus sp. KH3-4]
MLAELSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRGSAEFVRYGEEKAEIEGLFLLDNENHPCYGK
CAEVGIDISEGMVVLRREIFANGKSVCRVNGKLVTTAILRDIGSTLVDIHGQHEHQELMDPSRHLPLLDEYGGAEIAAAL
EEYRAVYEKYEQLRKKLEKLNENEQQMAHRLDLLTFQLDEIQKANLQANEDEQLMEEKVKIMNFQKIYEALKHSYEALSG
EQRGLDWIGLAMSHLEDVTSINPSLKEAYETIANSYYLLEDITYKLSDELEQLEYDPARLDFIESRLSEINQLKRKYGST
IEDILQYAEKIAEEIDELQHRETHIHELQKELKSVTEDLLIEAKNVTNVRQKYAKMLIDRIHQELKDLYMEKTQFDIVFT
KREGALDAPLLDGVPVRFHEDGVDDVEFYISTNVGEPLKPLAKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRVSIGSQVLCISHLPQVAAMADTHLFIAKETDGNRTRTLVKALSDEEKVKEIGRMISGVEITELTKQH
AKELLELAAKIKG

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=93290 MWM02_RS05970 WP_244403155.1 1153026..1154747(+) (recN) [Parageobacillus sp. KH3-4]
TTGCTAGCGGAATTATCCATAAAAAATTTTGCGATTATCGAATCATTGTCGGTTTCGTTTGACAAAGGGCTGACGGTGCT
AACCGGGGAAACGGGAGCGGGAAAGTCGATTATTATTGACGCCATCCAGCTGCTAATTGGAGGGCGCGGTTCGGCGGAGT
TTGTCCGCTACGGGGAAGAGAAGGCGGAAATAGAAGGGCTTTTTTTATTGGATAATGAGAACCATCCATGTTACGGCAAA
TGTGCGGAAGTAGGTATCGATATTAGCGAAGGCATGGTTGTTTTGCGCCGCGAAATTTTTGCGAACGGGAAAAGCGTGTG
CCGCGTCAATGGAAAATTAGTGACAACGGCTATATTGCGCGATATCGGTTCTACGCTTGTCGATATCCACGGCCAACATG
AACACCAAGAATTAATGGATCCGTCACGGCATCTTCCGTTGCTCGATGAATACGGAGGAGCGGAAATTGCGGCCGCGCTT
GAAGAATACCGCGCCGTTTATGAGAAATATGAACAATTGCGGAAAAAGTTGGAAAAGCTGAATGAAAATGAGCAGCAAAT
GGCTCATCGCCTTGATTTATTAACATTTCAGCTCGATGAAATTCAAAAAGCGAATTTGCAGGCAAACGAAGATGAACAAT
TAATGGAAGAAAAAGTAAAAATTATGAACTTCCAAAAAATTTATGAGGCGCTGAAACATAGTTATGAGGCGTTATCCGGC
GAACAACGTGGACTTGATTGGATTGGCCTGGCAATGAGCCATTTAGAAGATGTCACCTCTATCAACCCGTCATTGAAAGA
AGCGTACGAAACGATTGCGAATAGTTATTATTTATTGGAGGATATTACGTATAAATTGAGCGATGAACTTGAACAATTAG
AGTATGACCCGGCCCGCCTCGATTTTATTGAAAGCCGCCTTAGCGAAATTAACCAATTAAAACGGAAATACGGATCGACC
ATAGAAGATATTTTGCAATATGCCGAAAAAATTGCCGAGGAAATCGATGAACTTCAACATCGCGAAACCCATATCCATGA
ACTGCAAAAAGAATTGAAGTCGGTGACAGAAGATTTGTTAATTGAAGCAAAAAATGTGACGAACGTTCGCCAAAAATACG
CGAAAATGTTAATTGACCGTATTCATCAAGAATTAAAAGATCTATACATGGAAAAAACGCAATTTGATATCGTATTCACG
AAAAGAGAAGGAGCGCTCGATGCGCCGCTGCTTGACGGCGTACCAGTGAGATTTCATGAAGATGGCGTCGATGATGTGGA
ATTTTACATTTCCACCAACGTGGGCGAACCGCTAAAACCGCTGGCGAAAATTGCTTCCGGCGGCGAATTGTCACGCATCA
TGCTCGCGTTAAAAAGCATATTTTCGAAACATCAAGGCGTTACATCCATCATTTTTGATGAAGTCGATACAGGCGTCAGC
GGCCGGGTTGCGCAGGCGATCGCCGAAAAAATTTACCGCGTCTCGATTGGTTCGCAAGTGCTTTGTATTTCCCATTTGCC
GCAAGTAGCGGCGATGGCGGATACGCATTTATTTATTGCGAAGGAAACGGACGGAAATCGGACAAGGACATTAGTAAAAG
CATTATCGGACGAAGAAAAAGTAAAAGAAATCGGCCGGATGATTTCCGGGGTGGAAATTACAGAACTAACGAAGCAACAT
GCAAAAGAGCTGCTTGAGCTAGCAGCGAAAATCAAAGGATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.46

100

0.646

Multiple sequence alignment