Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   V3O06_RS01815 Genome accession   NZ_CP144247
Coordinates   373889..374707 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain YFY21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 368889..379707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3O06_RS01780 (V3O06_01780) - 369472..369601 (-) 130 Protein_342 hypothetical protein -
  V3O06_RS01785 (V3O06_01785) rpoZ 369640..369918 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  V3O06_RS01790 (V3O06_01790) gmk 369991..370620 (-) 630 WP_000015937.1 guanylate kinase -
  V3O06_RS01795 (V3O06_01795) ispH 370743..371693 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  V3O06_RS01800 (V3O06_01800) fimU 371863..372336 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  V3O06_RS01805 (V3O06_01805) pilV 372330..372890 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  V3O06_RS01810 (V3O06_01810) pilW 372891..373892 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  V3O06_RS01815 (V3O06_01815) pilX 373889..374707 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V3O06_RS01820 (V3O06_01820) pilY1 374719..378573 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  V3O06_RS01825 (V3O06_01825) pilY2 378586..379068 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  V3O06_RS01830 (V3O06_01830) pilE 379065..379490 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=932883 V3O06_RS01815 WP_000149374.1 373889..374707(+) (pilX) [Acinetobacter baumannii strain YFY21]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=932883 V3O06_RS01815 WP_000149374.1 373889..374707(+) (pilX) [Acinetobacter baumannii strain YFY21]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993