Detailed information NTG0932863

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: V3O04_RS17005
• Genome accession: NZ_CP144242
• Coordinates: 3545677..3546537 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152273.1
• Uniprot ID: A0A836M4G0
• Organism: Acinetobacter baumannii strain SRM3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3540677..3551537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V3O04_RS16985 (V3O04_16980)	secG	3541282..3541611 (-)	330	WP_096877299.1	preprotein translocase subunit SecG	-
V3O04_RS16990 (V3O04_16985)	tpiA	3541624..3542418 (-)	795	WP_000016522.1	triose-phosphate isomerase	-
V3O04_RS16995 (V3O04_16990)	pilB	3542709..3544421 (+)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
V3O04_RS17000 (V3O04_16995)	pilC	3544451..3545677 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
V3O04_RS17005 (V3O04_17000)	pilD	3545677..3546537 (+)	861	WP_001152273.1	A24 family peptidase	Machinery gene
V3O04_RS17010 (V3O04_17005)	coaE	3546539..3547135 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
V3O04_RS17015 (V3O04_17010)	-	3547132..3548046 (-)	915	WP_000075015.1	DMT family transporter	-
V3O04_RS17020 (V3O04_17015)	rlmB	3548082..3548831 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
V3O04_RS17025 (V3O04_17020)	-	3548933..3549259 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
V3O04_RS17030 (V3O04_17025)	-	3549336..3550646 (-)	1311	WP_029574813.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32088.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=932863 V3O04_RS17005 WP_001152273.1 3545677..3546537(+) (pilD) [Acinetobacter baumannii strain SRM3]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=932863 V3O04_RS17005 WP_001152273.1 3545677..3546537(+) (pilD) [Acinetobacter baumannii strain SRM3]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A836M4G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441