Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   V3O02_RS01475 Genome accession   NZ_CP144238
Coordinates   313994..314521 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain SRM21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 308994..319521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3O02_RS01460 (V3O02_01460) pilM 311547..312605 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  V3O02_RS01465 (V3O02_01465) pilN 312605..313246 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  V3O02_RS01470 (V3O02_01470) pilO 313243..313983 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  V3O02_RS01475 (V3O02_01475) pilP 313994..314521 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  V3O02_RS01480 (V3O02_01480) pilQ 314589..316754 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  V3O02_RS01485 (V3O02_01485) aroK 316766..317335 (+) 570 WP_000643712.1 shikimate kinase AroK -
  V3O02_RS01490 (V3O02_01490) aroB 317364..318446 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  V3O02_RS01495 (V3O02_01495) - 318462..319337 (+) 876 WP_000218802.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=932734 V3O02_RS01475 WP_000695065.1 313994..314521(+) (pilP) [Acinetobacter baumannii strain SRM21]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=932734 V3O02_RS01475 WP_000695065.1 313994..314521(+) (pilP) [Acinetobacter baumannii strain SRM21]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCGACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714