Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   V2B38_RS19525 Genome accession   NZ_CP144224
Coordinates   3819561..3820514 (-) Length   317 a.a.
NCBI ID   WP_012960813.1    Uniprot ID   -
Organism   Alkalihalophilus pseudofirmus strain BZ-TG-HK211     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3814561..3825514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2B38_RS19500 (V2B38_19500) - 3814620..3815075 (-) 456 WP_012960808.1 DinB family protein -
  V2B38_RS19505 (V2B38_19505) - 3815154..3816032 (-) 879 WP_323467502.1 NAD(P)-dependent oxidoreductase -
  V2B38_RS19510 (V2B38_19510) - 3816751..3817785 (-) 1035 WP_323467503.1 siderophore ABC transporter substrate-binding protein -
  V2B38_RS19515 (V2B38_19515) - 3817872..3818630 (-) 759 WP_323467504.1 ABC transporter ATP-binding protein -
  V2B38_RS19520 (V2B38_19520) - 3818624..3819571 (-) 948 WP_289235435.1 iron chelate uptake ABC transporter family permease subunit -
  V2B38_RS19525 (V2B38_19525) ceuB 3819561..3820514 (-) 954 WP_012960813.1 ABC transporter permease Machinery gene
  V2B38_RS19530 (V2B38_19530) - 3820719..3822227 (-) 1509 WP_289235436.1 DEAD/DEAH box helicase -
  V2B38_RS19535 (V2B38_19535) - 3822612..3824273 (-) 1662 WP_323467505.1 alpha-glucosidase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35009.41 Da        Isoelectric Point: 10.2034

>NTDB_id=932705 V2B38_RS19525 WP_012960813.1 3819561..3820514(-) (ceuB) [Alkalihalophilus pseudofirmus strain BZ-TG-HK211]
MKIKYLVLLFILLSFGSLFVGVSDISPLEIFNMTDEQKHIFLTSRIPRLISIIIAGVGMSICGLIMQQLTRNKFVSPTTA
GTLDSARLGILVSMILFASASPLQKMIVAFLFALAGTFIFMKILERIKIKNTIFIPLVGLMFGNIVGSVTTFFAYRYDLI
QNMSSWLQGNFAVIIRGRYELLYISIPLLIVAYIFANRFTIAGMGEEFSKNLGLKYKQVVNIGLVIVAAITAVVVLTVGM
IPFLGLIIPNIVTIYKGDNLRENLPHTALLGAVFVLFCDILGRIIIYPYEIPIGLTVGVIGSGIFLYLLLGRKKHGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=932705 V2B38_RS19525 WP_012960813.1 3819561..3820514(-) (ceuB) [Alkalihalophilus pseudofirmus strain BZ-TG-HK211]
ATGAAGATTAAATACTTAGTACTTTTATTTATCTTATTGTCATTTGGTTCCTTATTTGTAGGAGTATCTGATATTTCGCC
TTTAGAAATATTCAATATGACAGACGAGCAGAAACATATTTTCTTAACGAGCCGGATTCCGCGCCTGATCAGTATTATCA
TCGCAGGAGTTGGGATGAGTATTTGCGGATTAATTATGCAGCAGCTGACAAGAAATAAGTTTGTTTCACCGACCACCGCA
GGAACACTTGATTCAGCAAGACTGGGTATTTTAGTGAGCATGATCTTATTTGCTTCAGCAAGCCCGCTGCAAAAGATGAT
TGTTGCTTTTTTATTTGCGCTGGCAGGAACGTTCATTTTTATGAAAATCCTTGAGCGGATCAAAATTAAAAATACAATCT
TCATTCCTCTTGTCGGCTTAATGTTTGGAAACATCGTCGGATCGGTGACCACCTTTTTTGCTTACCGTTATGACTTAATT
CAGAACATGTCATCCTGGCTGCAAGGGAATTTTGCGGTCATTATCCGCGGTCGTTATGAATTGCTCTATATCAGTATTCC
TTTATTGATTGTCGCGTACATATTTGCTAACAGATTTACGATTGCTGGAATGGGTGAGGAATTTTCAAAGAACCTAGGCT
TGAAGTATAAGCAAGTAGTTAATATCGGCCTGGTAATTGTCGCTGCCATTACTGCAGTTGTTGTTTTAACTGTAGGAATG
ATTCCATTTTTAGGGCTGATCATTCCAAACATTGTAACGATTTATAAAGGAGATAATTTAAGAGAGAACCTGCCGCACAC
GGCGCTTCTAGGAGCTGTATTTGTACTGTTTTGTGACATTCTTGGGCGTATTATTATTTATCCGTACGAGATTCCAATTG
GATTAACTGTTGGTGTGATTGGAAGCGGAATCTTTCTTTATCTTCTACTCGGGAGAAAAAAACATGGGTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.449

98.423

0.546