Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V2B38_RS14730 Genome accession   NZ_CP144224
Coordinates   2801571..2803373 (-) Length   600 a.a.
NCBI ID   WP_323466751.1    Uniprot ID   A0AAJ2NNN9
Organism   Alkalihalophilus pseudofirmus strain BZ-TG-HK211     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2796571..2808373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2B38_RS14710 (V2B38_14710) - 2796732..2797442 (+) 711 WP_323466748.1 lytic transglycosylase domain-containing protein -
  V2B38_RS14715 (V2B38_14715) - 2797481..2799520 (-) 2040 WP_323466749.1 molybdopterin-dependent oxidoreductase -
  V2B38_RS14720 (V2B38_14720) - 2799754..2800128 (+) 375 WP_323466750.1 globin -
  V2B38_RS14725 (V2B38_14725) - 2800173..2801090 (+) 918 WP_012959722.1 ClpXP adapter SpxH family protein -
  V2B38_RS14730 (V2B38_14730) pepF 2801571..2803373 (-) 1803 WP_323466751.1 oligoendopeptidase F Regulator
  V2B38_RS14735 (V2B38_14735) - 2803474..2804676 (-) 1203 WP_323466752.1 competence protein CoiA -
  V2B38_RS14740 (V2B38_14740) cls 2804833..2806344 (-) 1512 WP_075681074.1 cardiolipin synthase -
  V2B38_RS14745 (V2B38_14745) mecA 2806452..2807105 (-) 654 WP_012959726.1 adaptor protein MecA -
  V2B38_RS14750 (V2B38_14750) - 2807567..2808235 (+) 669 WP_075681076.1 TerC family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69196.91 Da        Isoelectric Point: 4.7262

>NTDB_id=932692 V2B38_RS14730 WP_323466751.1 2801571..2803373(-) (pepF) [Alkalihalophilus pseudofirmus strain BZ-TG-HK211]
MAKQRLKRTEVPEASKWDLEAIFATDKEWEEEFSAVKSLYPQMTAYKGKLGESADSLYEALQKQDEISERLNRLYTYAHM
RNDEDTTNSLYQGLHDRAMSLSAQVAQSVAYLTPELLELDEKIIKQFINEHEGLNRYEHMLEELYKEKPHVLSEAEEAIL
AQASEALQSPGQTFGMLNNADLTFPTIKDEDGEDVEITHGRFISLLESKDRKVRENAFKAVYNTYGQFKNTFAQTLSGQV
KKDLFFANVRKYRSAREAALSQNHIPEVVYDQLVETINKNIHLLHRYVKLRKKVLGVEELHMYDLYTPLVEGSKVKVSYE
EAKDLVIQGVEPLGEEYVNVLKEGFTKRWVDVEETVGKRSGAYSSGAYGTMPYILMNWQDNIDNLFTLAHEFGHSMHSYY
TRKHQPYVYGDYTIFVAEVASTLNESLLNDYLVKTTTDKQQKLYLLNHFLEGFRGTVFRQTMFAEFEQKIHELSADGEAL
TPELLTTTYYELNKKYFGEEMVVDEEIGLEWARIPHFYYNFYVYQYATGYSAAAALSKQILEGGEPAVDRYLSFLKAGSS
NFPIEVLKEAGVDMTSKEPIEEALRLFEETLDEMERLLEA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=932692 V2B38_RS14730 WP_323466751.1 2801571..2803373(-) (pepF) [Alkalihalophilus pseudofirmus strain BZ-TG-HK211]
TTGGCTAAACAACGTTTAAAAAGAACTGAGGTACCTGAAGCTTCAAAATGGGACCTAGAAGCTATTTTTGCGACTGATAA
AGAGTGGGAAGAAGAGTTTTCTGCTGTAAAATCTCTTTACCCGCAAATGACCGCATATAAAGGGAAACTAGGAGAATCAG
CTGACAGTCTATACGAAGCACTTCAAAAGCAAGATGAGATCAGCGAGCGCTTAAACAGACTATATACGTATGCTCATATG
CGCAATGATGAAGATACAACAAATTCACTCTATCAAGGGCTGCATGACAGAGCAATGAGCCTAAGTGCACAAGTTGCACA
ATCTGTAGCATATTTAACTCCTGAACTGCTAGAGCTTGATGAGAAAATAATCAAGCAATTTATTAATGAACACGAGGGAT
TAAACAGATATGAGCACATGTTGGAAGAATTATATAAAGAAAAGCCGCATGTGTTATCTGAAGCAGAAGAGGCAATCTTA
GCTCAAGCGAGTGAAGCGCTTCAAAGTCCTGGGCAGACGTTTGGTATGTTAAACAATGCAGACTTAACATTTCCGACAAT
AAAGGATGAAGATGGTGAAGATGTAGAGATTACTCATGGCAGATTTATATCTTTACTTGAGTCAAAAGACCGTAAAGTGA
GAGAAAATGCATTTAAAGCCGTTTATAATACATATGGGCAGTTTAAAAATACCTTTGCTCAAACATTAAGCGGCCAAGTG
AAAAAAGATTTATTCTTTGCAAATGTACGGAAGTACCGCTCGGCTAGGGAGGCAGCATTAAGTCAAAATCATATCCCAGA
GGTGGTATATGACCAGTTAGTAGAAACGATTAATAAAAATATTCACTTGCTGCATCGATATGTGAAGCTGCGCAAAAAAG
TACTAGGCGTTGAAGAGCTGCATATGTATGACTTGTATACGCCGTTAGTAGAAGGCAGCAAGGTCAAAGTTTCTTATGAA
GAGGCTAAAGATCTTGTAATCCAAGGGGTCGAGCCGCTTGGAGAAGAATACGTGAACGTCTTAAAAGAAGGTTTTACTAA
ACGCTGGGTCGACGTAGAAGAAACGGTTGGTAAGCGCAGCGGGGCTTATTCTTCAGGTGCTTACGGAACGATGCCCTACA
TTCTCATGAACTGGCAGGATAACATCGATAACTTATTTACATTAGCTCATGAATTTGGCCATAGTATGCACAGCTACTAT
ACTCGTAAGCATCAGCCTTATGTCTATGGGGATTACACTATTTTTGTCGCTGAAGTTGCTTCGACGTTAAATGAATCATT
ATTAAATGATTACTTAGTTAAAACGACAACAGATAAACAACAAAAACTGTACCTGTTAAATCATTTTCTAGAAGGATTTA
GAGGGACAGTTTTCAGGCAGACAATGTTTGCTGAGTTTGAGCAAAAAATTCATGAACTGTCTGCTGACGGGGAGGCTTTG
ACCCCTGAATTGTTAACAACAACCTATTATGAATTAAACAAGAAATATTTCGGTGAAGAAATGGTTGTAGATGAAGAGAT
TGGTTTAGAATGGGCACGCATCCCTCATTTCTATTACAATTTCTATGTCTATCAGTATGCAACGGGCTACAGTGCTGCAG
CAGCTCTTTCAAAGCAGATATTAGAAGGAGGGGAGCCTGCGGTTGATCGTTACTTATCCTTCTTAAAAGCAGGGAGCTCT
AATTTCCCAATCGAGGTGCTGAAGGAAGCTGGTGTAGACATGACGTCTAAAGAGCCAATTGAAGAAGCGCTCCGTTTATT
TGAAGAAACACTTGATGAAATGGAACGTTTATTAGAAGCATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-184)

Peptidase family M3 (Peptidase_M3)

(205-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.324

98.667

0.487