Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VX159_RS07580 Genome accession   NZ_CP144212
Coordinates   1663021..1664382 (+) Length   453 a.a.
NCBI ID   WP_371325368.1    Uniprot ID   -
Organism   Dechloromonas sp. ZY10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1658021..1669382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VX159_RS07560 (VX159_07545) lplT 1658830..1660095 (-) 1266 WP_371325364.1 lysophospholipid transporter LplT -
  VX159_RS07565 (VX159_07550) - 1660266..1661165 (+) 900 WP_371325365.1 LysR substrate-binding domain-containing protein -
  VX159_RS07570 (VX159_07555) alr 1661315..1662403 (+) 1089 WP_371325366.1 alanine racemase -
  VX159_RS07575 (VX159_07560) - 1662420..1662920 (-) 501 WP_371325367.1 Crp/Fnr family transcriptional regulator -
  VX159_RS07580 (VX159_07565) radA 1663021..1664382 (+) 1362 WP_371325368.1 DNA repair protein RadA Machinery gene
  VX159_RS07585 (VX159_07570) - 1664386..1666884 (+) 2499 WP_371325369.1 ABC transporter permease -
  VX159_RS07590 (VX159_07575) efp 1667242..1667802 (-) 561 WP_371325370.1 elongation factor P -
  VX159_RS07595 (VX159_07580) earP 1667843..1668961 (-) 1119 WP_371325371.1 elongation factor P maturation arginine rhamnosyltransferase EarP -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48308.61 Da        Isoelectric Point: 7.4145

>NTDB_id=932614 VX159_RS07580 WP_371325368.1 1663021..1664382(+) (radA) [Dechloromonas sp. ZY10]
MAKSKTVYYCGECGASSPKWQGQCPACSAWNTLVEGVAEKAAGNHRFDSLAPSARLQNLSEIEAREAERIPTGIGEFDRA
LGGGLVAGGVVLIGGDPGIGKSTLLLQALARLSQAHPVLYVSGEESGEQVALRARRLTLDAERVRLMAEINLERIVSALQ
SEKPQVAVIDSIQTLWSDQLSSAPGSVAQVRECAAQLTRLAKQSGTTVILVGHVTKEGALAGPRVLEHIVDTVLYFEGDT
HSSFRLIRAFKNRFGAVNELGVFAMTETGLKGVNNPSALFLSQHGQEVAGSCVMVTQEGTRPLLVEIQALVDTAHGNPRR
LTVGLDAQRLAMLLAVLHRHAGIGCFDQDVFVNAVGGVKISEPAADLAVLMSIASSLKNKPLPSKLVVFGEVGLAGEIRP
APRGQERLKEAAKLGFTRALVPEANLPRQPIPGIEVIAVRRIDEAVMRIRELD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=932614 VX159_RS07580 WP_371325368.1 1663021..1664382(+) (radA) [Dechloromonas sp. ZY10]
ATGGCTAAAAGCAAAACCGTTTATTACTGCGGCGAATGTGGTGCCAGCAGTCCCAAGTGGCAGGGCCAGTGTCCGGCCTG
CAGCGCCTGGAATACCCTGGTCGAAGGCGTGGCCGAAAAGGCTGCCGGCAACCATCGTTTCGATTCGCTGGCTCCTTCCG
CGCGCCTGCAGAACCTGTCCGAAATTGAAGCCCGCGAGGCCGAGCGGATTCCTACCGGGATCGGCGAGTTCGACCGCGCC
CTCGGCGGCGGTCTGGTGGCCGGCGGCGTGGTGCTGATCGGCGGCGACCCGGGGATCGGCAAAAGTACCTTGCTGTTGCA
GGCGCTGGCCAGGCTGTCGCAGGCGCACCCGGTGCTTTACGTCAGCGGCGAGGAGTCGGGCGAGCAGGTTGCGCTGCGGG
CGCGGCGGCTGACGCTGGATGCCGAGCGGGTGCGCTTGATGGCCGAGATCAACCTTGAACGCATCGTTTCCGCCTTGCAA
AGCGAAAAGCCGCAGGTAGCGGTGATCGACTCGATCCAGACCCTGTGGTCGGATCAGTTGTCGAGTGCCCCCGGCTCGGT
GGCGCAGGTGCGCGAATGCGCGGCGCAGTTGACGCGGCTGGCCAAACAGTCGGGGACGACGGTGATCCTGGTCGGGCACG
TGACCAAGGAAGGTGCGCTGGCCGGCCCGCGCGTGCTTGAGCACATTGTCGATACCGTGCTCTATTTTGAGGGCGATACG
CATTCGAGCTTTCGCCTGATCCGCGCTTTCAAGAACCGTTTTGGCGCGGTCAATGAGCTCGGTGTGTTTGCGATGACCGA
AACCGGGCTCAAGGGGGTGAACAACCCGTCGGCGCTGTTTTTGTCGCAGCACGGCCAGGAAGTTGCAGGGTCCTGCGTGA
TGGTGACGCAGGAAGGGACGCGGCCGTTGCTGGTCGAAATCCAGGCGCTGGTCGATACCGCGCACGGCAATCCCCGCCGG
CTGACCGTCGGCCTCGATGCGCAGCGGCTGGCGATGTTGCTGGCGGTGCTGCACCGCCATGCCGGGATCGGCTGCTTTGA
CCAGGATGTGTTCGTCAATGCGGTGGGCGGGGTCAAGATCAGCGAGCCGGCCGCCGACCTGGCGGTCTTGATGTCGATTG
CCTCGTCGCTCAAGAACAAGCCCTTGCCGAGCAAGCTGGTGGTGTTCGGCGAGGTCGGTCTGGCCGGCGAGATTCGCCCG
GCGCCGCGCGGTCAGGAGCGCCTTAAGGAGGCGGCCAAGCTGGGCTTTACCCGGGCGCTGGTCCCCGAGGCCAATCTGCC
GCGCCAGCCGATTCCCGGGATCGAGGTGATTGCGGTACGGCGGATCGACGAGGCCGTGATGCGCATCCGCGAACTGGACT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.106

99.779

0.51
  radA Streptococcus pneumoniae Rx1

48.673

99.779

0.486
  radA Streptococcus pneumoniae D39

48.673

99.779

0.486
  radA Streptococcus pneumoniae R6

48.673

99.779

0.486
  radA Streptococcus pneumoniae TIGR4

48.673

99.779

0.486
  radA Streptococcus mitis NCTC 12261

48.673

99.779

0.486
  radA Streptococcus mitis SK321

48.673

99.779

0.486