Detailed information NTG0932611

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: VX159_RS02160
• Genome accession: NZ_CP144212
• Coordinates: 455996..457021 (+)
• Length: 341 a.a.
• NCBI ID: WP_371324349.1
• Uniprot ID: -
• Organism: Dechloromonas sp. ZY10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	455996..466234	455996..457021	within	0

Gene organization within MGE regions

Location: 455996..466234

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VX159_RS02160 (VX159_02160)	pilA	455996..457021 (+)	1026	WP_371324349.1	signal recognition particle-docking protein FtsY	Machinery gene
VX159_RS02165 (VX159_02165)	-	457100..457750 (+)	651	WP_371324350.1	cell division ATP-binding protein FtsE	-
VX159_RS02170 (VX159_02170)	ftsX	457747..458646 (+)	900	WP_371324351.1	permease-like cell division protein FtsX	-
VX159_RS02175 (VX159_02175)	-	458828..460456 (+)	1629	WP_371324352.1	FAD-dependent oxidoreductase	-
VX159_RS02180 (VX159_02180)	-	461226..462347 (-)	1122	WP_371324353.1	branched-chain amino acid ABC transporter substrate-binding protein	-
VX159_RS02185 (VX159_02185)	-	462503..462982 (+)	480	WP_371324354.1	Lrp/AsnC family transcriptional regulator	-
VX159_RS02190 (VX159_02190)	-	464422..465003 (-)	582	WP_371324355.1	hypothetical protein	-
VX159_RS02195 (VX159_02195)	-	465014..466234 (-)	1221	WP_371324356.1	exo-beta-N-acetylmuramidase NamZ domain-containing protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 36355.95 Da
• Isoelectric Point: 6.9890

>NTDB_id=932611 VX159_RS02160 WP_371324349.1 455996..457021(+) (pilA) [Dechloromonas sp. ZY10]
MFSFLKKKIAGEPAAEAPIVAESTPAAAPVAAPAVEAAAAPSWRERLFKGLAKTRAQLGGKLKSLFSRGKVDDELLEELE
TLLLTSDVGIEATTHLLEELKARAKRDKLDTPEAIQKALSDALHDTLLPLEQPLDVSGHKPFVIMIAGVNGAGKTTSIGK
LAKYFQNQGKSVLLAAGDTFRAAAREQLQTWGERNSVTVIAQESGDPAAVIFDAISAAKARGIDIVLADTAGRLPTQLHL
MEEIAKVRRVIQKVDPSGPHETLLVLDANIGQNALQQVKAFDKAINVTGLVVTKLDGTAKGGVIAGIARQCPKPIRFIGV
GEQIDDLRPFVARDFVDALFE

Nucleotide

• Length: 1026 bp

>NTDB_id=932611 VX159_RS02160 WP_371324349.1 455996..457021(+) (pilA) [Dechloromonas sp. ZY10]
ATGTTCAGTTTCCTCAAGAAAAAAATCGCCGGCGAACCGGCAGCCGAAGCACCGATCGTCGCCGAAAGCACGCCAGCCGC
TGCACCGGTCGCAGCGCCGGCCGTCGAAGCCGCCGCCGCGCCTTCCTGGCGCGAGCGCCTGTTCAAGGGCCTGGCCAAGA
CCCGCGCCCAACTCGGCGGCAAGCTCAAGTCGCTGTTCTCGCGGGGCAAGGTCGATGACGAGTTGCTCGAAGAACTGGAA
ACCCTGCTCCTGACCTCCGATGTCGGGATCGAGGCAACCACCCACCTGCTCGAAGAGCTCAAGGCGCGCGCCAAGCGCGA
CAAGCTCGACACCCCGGAGGCGATCCAGAAGGCCCTCTCCGACGCGCTGCATGACACCCTGCTGCCGCTCGAACAACCGC
TCGACGTGTCCGGCCACAAACCCTTCGTGATCATGATTGCCGGGGTTAACGGCGCCGGCAAGACGACCTCGATCGGCAAA
CTGGCCAAGTACTTCCAGAACCAGGGCAAGAGCGTCCTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCCGCGAGCA
ATTGCAGACCTGGGGCGAGCGCAACAGCGTGACGGTGATCGCGCAGGAGTCCGGCGACCCGGCGGCGGTGATCTTCGACG
CCATTTCGGCGGCCAAGGCGCGCGGCATCGACATCGTCCTCGCCGACACTGCCGGCCGTCTGCCGACCCAGCTGCACCTG
ATGGAGGAAATCGCCAAGGTCCGCCGCGTGATCCAGAAGGTCGACCCGAGCGGCCCGCACGAAACCCTGCTCGTGCTCGA
CGCCAATATCGGCCAGAACGCGCTGCAACAGGTCAAGGCCTTCGACAAGGCGATCAACGTCACCGGCCTGGTGGTGACCA
AGCTCGACGGCACCGCCAAGGGCGGCGTGATCGCCGGCATCGCCCGCCAGTGTCCGAAACCGATCCGCTTCATCGGCGTC
GGCGAACAGATCGACGACCTGCGCCCCTTCGTCGCGCGCGATTTCGTCGATGCGCTGTTTGAGTAG

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (141-340)

• SRP54-type protein, helical bundle domain (SRP54_N) (58-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	64.667	87.977	0.569