Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   Aerorivi_RS01930 Genome accession   NZ_CP144176
Coordinates   418795..420234 (+) Length   479 a.a.
NCBI ID   WP_106885626.1    Uniprot ID   -
Organism   Aeromonas rivipollensis strain DSM 24593     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413795..425234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aerorivi_RS01900 (Aerorivi_00393) mlaF 414373..415173 (-) 801 WP_025328535.1 phospholipid ABC transporter ATP-binding protein MlaF -
  Aerorivi_RS01905 (Aerorivi_00394) - 415380..416375 (+) 996 WP_025328534.1 KpsF/GutQ family sugar-phosphate isomerase -
  Aerorivi_RS01910 (Aerorivi_00395) kdsC 416375..416929 (+) 555 WP_412705883.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  Aerorivi_RS01915 (Aerorivi_00396) lptC 416926..417486 (+) 561 WP_042649050.1 LPS export ABC transporter periplasmic protein LptC -
  Aerorivi_RS01920 (Aerorivi_00397) lptA 417473..417991 (+) 519 WP_025328531.1 lipopolysaccharide transport periplasmic protein LptA -
  Aerorivi_RS01925 (Aerorivi_00398) lptB 418004..418729 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  Aerorivi_RS01930 (Aerorivi_00399) rpoN/rpoN1 418795..420234 (+) 1440 WP_106885626.1 RNA polymerase factor sigma-54 Machinery gene
  Aerorivi_RS01935 (Aerorivi_00400) hpf 420255..420542 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  Aerorivi_RS01940 (Aerorivi_00401) ptsN 420545..420991 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  Aerorivi_RS01945 (Aerorivi_00402) rapZ 421032..421898 (+) 867 WP_139438909.1 RNase adapter RapZ -
  Aerorivi_RS01950 (Aerorivi_00403) npr 421919..422191 (+) 273 WP_005331359.1 PTS phosphocarrier protein NPr -
  Aerorivi_RS01955 (Aerorivi_00404) - 422210..424114 (-) 1905 WP_412705884.1 BglG family transcription antiterminator -
  Aerorivi_RS01960 (Aerorivi_00405) dagF 424221..424961 (-) 741 WP_106885629.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53778.73 Da        Isoelectric Point: 4.4177

>NTDB_id=932569 Aerorivi_RS01930 WP_106885626.1 418795..420234(+) (rpoN/rpoN1) [Aeromonas rivipollensis strain DSM 24593]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSPIEPQDASQLDSSDAMAQDKMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEEVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=932569 Aerorivi_RS01930 WP_106885626.1 418795..420234(+) (rpoN/rpoN1) [Aeromonas rivipollensis strain DSM 24593]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAATAACCCCTTGCTGGAGCAGGAGGAGAATGAGG
CGCAGGAAACCAGCCCGATAGAGCCCCAGGACGCTAGTCAACTCGACTCCAGCGACGCCATGGCGCAGGACAAGATGCCG
GATGAACTGCCGGTGGACACCACCTGGGATGAGGTCTACTCCGCCGGTACGGCCCAGAGCGCCGGCCCCATCCATGATGG
GGAAGACAGCGTCTATCAGGGGGAAACCACCGAGAACCTGCAGGACTATCTGCTATGGCAGATGCGCCTGACGCCGTTCA
GCGATCTGGATGCCGCCATCGCCCTCGCCATCATCGATGCCATCGATGAGTCCGGCTACCTGACCGTCTCTCTCGAAGAT
ATTCAGGCTGCAGTCAGCAGTGAAGAGGTAGAAGTTGAACTGGATGAAGTGGAAGCCGTGCTCAAGCGAGTGCAGCATTT
CGATCCGGTTGGCATAGCCGCGCGCTCGGTGCAGGAGTGTCTGCTGATCCAGCTTGGCCAGTACTCGCCGGATCTGCCCT
GGCTCAATGAGGCAAGGGAGGTGATCCGCGAGCACATGGATCTGCTCGGCAACCGCGACTACCGCACCCTGGCACGCAAG
ACCCGGCTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTTATCCAGCAGCTGGAGCCCAGACCCGGCAATGGCATCAT
CCAGAGTGAATCGCAATACGTGATCCCGGATGTATCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAGCTCAACCCGG
ATTCGGCGCCGCGCATTCGTGTCAACGAGGCCTATGCGGCCATGGCACGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGCTCCCATCTGCAGGAAGCCAAATGGTTCATCAAAAGCCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATAGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCCG
AGGCGGTGGAGATGCACGAGTCGACGATTTCACGGGTGACGACCCAGAAGTACATGCATACGCCCCGTGGCATCTTTGAA
CTGAAGTTTTTTTTCTCCAGTCATGTCAACACGGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCCGAAAACCCGGCCAAACCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.471

100

0.495