Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   V2176_RS19930 Genome accession   NZ_CP143963
Coordinates   3849350..3850462 (+) Length   370 a.a.
NCBI ID   WP_003178089.1    Uniprot ID   A0A415J9T0
Organism   Bacillus licheniformis strain FUA2151     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3844350..3855462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2176_RS19905 (V2176_19905) rnpA 3845079..3845438 (-) 360 Protein_3921 ribonuclease P protein component -
  V2176_RS19910 (V2176_19910) rpmH 3845523..3845657 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  V2176_RS19915 (V2176_19915) dnaA 3846297..3847637 (+) 1341 WP_003178077.1 chromosomal replication initiator protein DnaA -
  V2176_RS19920 (V2176_19920) dnaN 3847814..3848950 (+) 1137 WP_003178080.1 DNA polymerase III subunit beta -
  V2176_RS19925 (V2176_19925) yaaA 3849118..3849333 (+) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  V2176_RS19930 (V2176_19930) recF 3849350..3850462 (+) 1113 WP_003178089.1 DNA replication/repair protein RecF Machinery gene
  V2176_RS19935 (V2176_19935) remB 3850480..3850722 (+) 243 WP_003178090.1 extracellular matrix regulator RemB -
  V2176_RS19940 (V2176_19940) gyrB 3850782..3852695 (+) 1914 WP_009330043.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  V2176_RS19945 (V2176_19945) gyrA 3852886..3855354 (+) 2469 WP_003178095.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42482.33 Da        Isoelectric Point: 6.7331

>NTDB_id=932314 V2176_RS19930 WP_003178089.1 3849350..3850462(+) (recF) [Bacillus licheniformis strain FUA2151]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=932314 V2176_RS19930 WP_003178089.1 3849350..3850462(+) (recF) [Bacillus licheniformis strain FUA2151]
TTGTATATCCAAAATCTTACATTATCGTCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACAAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTCGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGACATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCTTGAAGCAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTTTCAGGTCCCCACAG
GGATGATGTTCTTTTCTATGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGCACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGACTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J9T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.13

99.459

0.886