Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   V2176_RS17125 Genome accession   NZ_CP143963
Coordinates   3257256..3258413 (-) Length   385 a.a.
NCBI ID   WP_003185733.1    Uniprot ID   -
Organism   Bacillus licheniformis strain FUA2151     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3252256..3263413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2176_RS17095 (V2176_17095) - 3252500..3252919 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  V2176_RS17100 (V2176_17100) comFC 3252978..3253712 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  V2176_RS17105 (V2176_17105) - 3253669..3253953 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  V2176_RS17110 (V2176_17110) comFA 3254008..3255402 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  V2176_RS17115 (V2176_17115) - 3255523..3256365 (-) 843 WP_003185726.1 DegV family protein -
  V2176_RS17120 (V2176_17120) degU 3256485..3257174 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  V2176_RS17125 (V2176_17125) degS 3257256..3258413 (-) 1158 WP_003185733.1 sensor histidine kinase Regulator
  V2176_RS17130 (V2176_17130) - 3258627..3259265 (+) 639 WP_003185736.1 YigZ family protein -
  V2176_RS17135 (V2176_17135) - 3259280..3260356 (+) 1077 WP_003185737.1 LCP family protein -
  V2176_RS17140 (V2176_17140) - 3260441..3260815 (-) 375 WP_025806150.1 hypothetical protein -
  V2176_RS17145 (V2176_17145) - 3260935..3261999 (-) 1065 WP_003185739.1 glycosyltransferase family 4 protein -
  V2176_RS17150 (V2176_17150) tuaH 3262130..3263311 (-) 1182 WP_003185740.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44636.36 Da        Isoelectric Point: 6.7863

>NTDB_id=932306 V2176_RS17125 WP_003185733.1 3257256..3258413(-) (degS) [Bacillus licheniformis strain FUA2151]
MSVSKMDSKVLDSIIMKMLKTVDGSKDEVFQIGEQSRQQYEGLVEELKQIKQQVNEVIDLGDRLEVHARHARNRLSEVSR
NFHKFSEEEIREAYEKAHKLQVELTMIQQREKQLREKRDDLERRLLGLQEIIERSEGLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDKGTEEGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEDYHGKAKIHFQCIGESEERRIAPRFEVALFRLAQEAVTNALKHSESTEIHVKVEV
TKDFVTLIIKDNGNGFDLKEVKGKKNKSFGLLGMKERVDLLEGSMTIDSKIGLGTFILIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=932306 V2176_RS17125 WP_003185733.1 3257256..3258413(-) (degS) [Bacillus licheniformis strain FUA2151]
GTGAGCGTTTCCAAAATGGACTCCAAAGTTTTAGATTCAATCATTATGAAGATGTTAAAAACGGTTGACGGGAGCAAGGA
TGAAGTCTTTCAAATCGGAGAGCAGTCCCGCCAGCAATACGAAGGCTTGGTAGAAGAGCTGAAACAGATTAAACAGCAGG
TCAACGAAGTCATTGATCTTGGAGACAGGCTGGAAGTGCATGCCCGCCATGCGCGGAACCGCTTGTCAGAGGTCAGCAGA
AACTTTCATAAATTCAGTGAAGAAGAGATTCGCGAAGCTTATGAAAAAGCCCACAAACTGCAGGTTGAACTGACAATGAT
CCAGCAGCGGGAAAAGCAGCTGAGAGAGAAGCGTGATGATCTGGAACGGCGCCTTTTGGGGCTTCAGGAAATCATCGAGC
GTTCAGAAGGGCTTGTCAGTCAGATTACCGTCGTCTTAAACTACTTAAATCAGGATCTGCGCCAGGTCGGCGTTCTCCTT
GAAGATGCGCAGGCCAAGCAGGATTTCGGACTGCGGATTATCGAAGCCCAGGAGGAAGAAAGAAAAAGGGTCTCAAGGGA
AATCCACGACGGTCCTGCGCAAATGCTGGCCAACGTTATGATGAGATCTGAACTGATCGAACGCATCTTCAGAGACAAAG
GAACAGAAGAAGGCTTTCAGGAAATTAAAAACCTCCGGCAAAACGTCAGAAATGCTCTTTATGAAGTCAGAAGAATCATT
TATGATTTAAGGCCGATGGCTTTAGACGATTTGGGATTGATACCGACGCTCAGAAAATACTTGAACACGATCGAAGATTA
TCATGGAAAAGCAAAGATTCATTTCCAATGCATCGGAGAATCCGAAGAAAGAAGAATAGCACCGCGGTTTGAGGTTGCAC
TATTCCGGCTTGCACAGGAAGCGGTGACAAACGCCTTAAAACACTCCGAATCAACTGAAATTCATGTTAAAGTAGAAGTG
ACAAAAGATTTTGTGACGCTGATTATCAAAGACAATGGAAACGGCTTTGACTTAAAAGAAGTAAAAGGCAAGAAGAACAA
ATCTTTCGGTCTGCTAGGTATGAAAGAAAGAGTCGATTTGCTCGAAGGCTCAATGACAATTGATTCGAAAATAGGTCTTG
GGACATTTATATTGATTAAAGTTCCACTGTCTTTGTAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(292-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

89.351

100

0.894