Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   V2176_RS12225 Genome accession   NZ_CP143963
Coordinates   2320268..2320897 (-) Length   209 a.a.
NCBI ID   WP_330937856.1    Uniprot ID   -
Organism   Bacillus licheniformis strain FUA2151     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2315268..2325897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2176_RS12200 (V2176_12200) rpsT 2315482..2315748 (+) 267 WP_003183682.1 30S ribosomal protein S20 -
  V2176_RS12205 (V2176_12205) holA 2315810..2316853 (-) 1044 WP_025804972.1 DNA polymerase III subunit delta -
  V2176_RS12210 (V2176_12210) - 2317083..2317214 (+) 132 WP_003183686.1 YqzM family protein -
  V2176_RS12215 (V2176_12215) - 2317239..2319626 (-) 2388 WP_009327865.1 DNA internalization-related competence protein ComEC/Rec2 -
  V2176_RS12220 (V2176_12220) - 2319630..2320199 (-) 570 WP_003183690.1 ComE operon protein 2 -
  V2176_RS12225 (V2176_12225) comEA 2320268..2320897 (-) 630 WP_330937856.1 helix-hairpin-helix domain-containing protein Machinery gene
  V2176_RS12230 (V2176_12230) comER 2320981..2321802 (+) 822 WP_003183696.1 late competence protein ComER -
  V2176_RS12235 (V2176_12235) - 2321872..2322627 (-) 756 WP_003183697.1 class I SAM-dependent DNA methyltransferase -
  V2176_RS12240 (V2176_12240) rsfS 2322624..2322980 (-) 357 WP_330937857.1 ribosome silencing factor -
  V2176_RS12245 (V2176_12245) yqeK 2322994..2323557 (-) 564 WP_003183701.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  V2176_RS12250 (V2176_12250) - 2323547..2324116 (-) 570 WP_003183702.1 nicotinate-nucleotide adenylyltransferase -
  V2176_RS12255 (V2176_12255) yhbY 2324135..2324425 (-) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  V2176_RS12260 (V2176_12260) aroE 2324419..2325255 (-) 837 WP_003183706.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22467.44 Da        Isoelectric Point: 5.4286

>NTDB_id=932288 V2176_RS12225 WP_330937856.1 2320268..2320897(-) (comEA) [Bacillus licheniformis strain FUA2151]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSGLSIPEEASAQTYDKKEEVKREKSAGKEAVIINLKGAVKNPGV
YQMKEGDRVHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRADGASVDIVNINTASSEELQA
IPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=932288 V2176_RS12225 WP_330937856.1 2320268..2320897(-) (comEA) [Bacillus licheniformis strain FUA2151]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCTGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCTGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCCTCTCCATTCCCGAGGAGGCTTCTGCACAGACGTATGACAAGAAGG
AGGAGGTGAAACGGGAAAAAAGCGCGGGAAAAGAGGCGGTTATCATCAATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAAGAGGGAGACAGGGTCCACGATGTATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGATCAAAAGCA
AATTAACCTTGCAGCCGTTTTGCAGGACGGTATGGTGGTTTACATTCCATTTGAGGGGGAAGAGGCTGCTGATTCTTTCT
CGAAAGCGGGTTCAAGGGCAGATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGAGCTTCAGGCG
ATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATCGAATACCGCGAGGAGAACGGACCGTTTCACACGGTAGAAGA
CATAACAAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(71-123)

Helix-hairpin-helix motif (HHH_3)

(147-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

50.935

100

0.522