Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8950_RS06170 Genome accession   NZ_AP028355
Coordinates   1191594..1192088 (+) Length   164 a.a.
NCBI ID   WP_002860433.1    Uniprot ID   Q5HTR6
Organism   Campylobacter jejuni strain BCH-10539     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1186594..1197088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8950_RS06155 (B10539_12160) - 1187980..1189158 (-) 1179 WP_002905840.1 metal-dependent hydrolase -
  R8950_RS06160 (B10539_12170) gpsA 1189168..1190064 (-) 897 WP_079676345.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8950_RS06165 (B10539_12180) gatB 1190061..1191479 (-) 1419 WP_002859278.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8950_RS06170 (B10539_12190) luxS 1191594..1192088 (+) 495 WP_002860433.1 S-ribosylhomocysteine lyase Regulator
  R8950_RS06175 (B10539_12200) - 1192398..1193390 (+) 993 WP_060809616.1 isopenicillin N synthase family dioxygenase -
  R8950_RS06180 (B10539_12210) - 1193401..1194171 (+) 771 WP_002855781.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8950_RS06185 (B10539_12220) metE 1194183..1196447 (+) 2265 WP_002887822.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18271.22 Da        Isoelectric Point: 6.3290

>NTDB_id=93227 R8950_RS06170 WP_002860433.1 1191594..1192088(+) (luxS) [Campylobacter jejuni strain BCH-10539]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=93227 R8950_RS06170 WP_002860433.1 1191594..1192088(+) (luxS) [Campylobacter jejuni strain BCH-10539]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGTGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HTR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment