Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   VXF94_RS20150 Genome accession   NZ_CP143956
Coordinates   3872621..3873229 (-) Length   202 a.a.
NCBI ID   WP_014470057.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3867621..3878229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS20130 (VXF94_20130) dnaD 3867860..3868558 (+) 699 WP_013352649.1 DNA replication protein DnaD -
  VXF94_RS20135 (VXF94_20135) nth 3868577..3869236 (+) 660 WP_013352648.1 endonuclease III -
  VXF94_RS20140 (VXF94_20140) - 3869233..3869724 (+) 492 WP_013352647.1 YpoC family protein -
  VXF94_RS20145 (VXF94_20145) - 3869802..3872582 (-) 2781 WP_013352646.1 PBP1A family penicillin-binding protein -
  VXF94_RS20150 (VXF94_20150) recU 3872621..3873229 (-) 609 WP_014470057.1 Holliday junction resolvase RecU Machinery gene
  VXF94_RS20155 (VXF94_20155) - 3873271..3874233 (+) 963 WP_013352644.1 DUF2515 domain-containing protein -
  VXF94_RS20160 (VXF94_20160) sspM 3874276..3874380 (-) 105 WP_013352643.1 acid-soluble spore protein SspM -
  VXF94_RS20165 (VXF94_20165) - 3874585..3874827 (+) 243 WP_013352642.1 DUF5446 family protein -
  VXF94_RS20170 (VXF94_20170) - 3874873..3875241 (+) 369 WP_013352641.1 YppE family protein -
  VXF94_RS20175 (VXF94_20175) - 3875280..3875462 (-) 183 WP_003153532.1 YppF family protein -
  VXF94_RS20180 (VXF94_20180) - 3875651..3876160 (+) 510 WP_014472066.1 YppG family protein -
  VXF94_RS20185 (VXF94_20185) - 3876190..3876603 (-) 414 WP_014470060.1 Hsp20/alpha crystallin family protein -
  VXF94_RS20190 (VXF94_20190) - 3876740..3877246 (+) 507 WP_013352638.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23738.77 Da        Isoelectric Point: 9.2648

>NTDB_id=932247 VXF94_RS20150 WP_014470057.1 3872621..3873229(-) (recU) [Bacillus amyloliquefaciens strain Fad 108]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNQYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFEKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=932247 VXF94_RS20150 WP_014470057.1 3872621..3873229(-) (recU) [Bacillus amyloliquefaciens strain Fad 108]
GTGATTCGGTATCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATCAATATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCATTATCCGAAAAGAAGCGCCGCAGTTATTAAGGAAGCTTAT
TTTAAGCAGTCTTCGACAACCGATTACAACGGAATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTAGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGAAAAGGTTTATTTCCTCGAAGCTGACAAGCTGTTTGTCTTTTGGGAAAGAAAGGAG
AACAACGGCAGAAAGTCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886