Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   VXF94_RS18660 Genome accession   NZ_CP143956
Coordinates   3612590..3613357 (+) Length   255 a.a.
NCBI ID   WP_014470678.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3607590..3618357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS18630 (VXF94_18630) - 3607875..3610007 (+) 2133 WP_013352923.1 HD family phosphohydrolase -
  VXF94_RS18635 (VXF94_18635) ybeY 3610008..3610481 (+) 474 WP_013352922.1 rRNA maturation RNase YbeY -
  VXF94_RS18640 (VXF94_18640) - 3610462..3610836 (+) 375 WP_014470681.1 diacylglycerol kinase family protein -
  VXF94_RS18645 (VXF94_18645) - 3610959..3611369 (+) 411 WP_013352920.1 cytidine deaminase -
  VXF94_RS18650 (VXF94_18650) era 3611350..3612255 (+) 906 WP_014470680.1 GTPase Era -
  VXF94_RS18655 (VXF94_18655) - 3612410..3612553 (+) 144 WP_007408286.1 YqzL family protein -
  VXF94_RS18660 (VXF94_18660) recO 3612590..3613357 (+) 768 WP_014470678.1 DNA repair protein RecO Machinery gene
  VXF94_RS18665 (VXF94_18665) glyQ 3613659..3614546 (+) 888 WP_013352917.1 glycine--tRNA ligase subunit alpha -
  VXF94_RS18670 (VXF94_18670) glyS 3614539..3616578 (+) 2040 WP_014470677.1 glycine--tRNA ligase subunit beta -
  VXF94_RS18675 (VXF94_18675) ccpN 3616679..3617317 (+) 639 WP_014470676.1 transcriptional regulator CcpN -
  VXF94_RS18680 (VXF94_18680) - 3617343..3618155 (+) 813 WP_013352914.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29300.98 Da        Isoelectric Point: 9.0137

>NTDB_id=932236 VXF94_RS18660 WP_014470678.1 3612590..3613357(+) (recO) [Bacillus amyloliquefaciens strain Fad 108]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSRDG
TFHFSVRDNGFICHRCFGKDPYKVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKHLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=932236 VXF94_RS18660 WP_014470678.1 3612590..3613357(+) (recO) [Bacillus amyloliquefaciens strain Fad 108]
ATGCTGACAAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGAGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTTATGGCAAGAGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGACTTGTTTTTGACGGCATATGCCGCTTTTATCGCTGAACTTACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAAGGGACTGACCCGGACGTGATCACCTTCA
TCGTTCAGATGAAAATGCTCGGCGTCATGGGACTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCCGGGACGGG
ACGTTTCATTTTTCGGTAAGAGATAATGGTTTTATCTGCCACCGCTGCTTTGGAAAGGATCCGTACAAAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCATTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTTATCGATCTGTATTATGAGGAATATTCAGGGCTTTATTTAAAGTCTAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGCACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

90.196

100

0.902