Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   VXF94_RS17860 Genome accession   NZ_CP143956
Coordinates   3464392..3465144 (+) Length   250 a.a.
NCBI ID   WP_013353066.1    Uniprot ID   A0A9P1JIQ0
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3459392..3470144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS17845 (VXF94_17845) - 3459617..3459808 (-) 192 WP_013353069.1 hypothetical protein -
  VXF94_RS17850 (VXF94_17850) - 3460259..3462901 (+) 2643 WP_013353068.1 valine--tRNA ligase -
  VXF94_RS17855 (VXF94_17855) - 3462960..3464252 (+) 1293 WP_013353067.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  VXF94_RS17860 (VXF94_17860) comC 3464392..3465144 (+) 753 WP_013353066.1 prepilin peptidase Machinery gene
  VXF94_RS17865 (VXF94_17865) - 3465270..3466271 (+) 1002 WP_013353065.1 SPOR domain-containing protein -
  VXF94_RS17870 (VXF94_17870) - 3466413..3466982 (+) 570 WP_013353064.1 Maf family protein -
  VXF94_RS17875 (VXF94_17875) radC 3467014..3467709 (+) 696 WP_013353063.1 RadC family protein -
  VXF94_RS17880 (VXF94_17880) mreB 3467801..3468814 (+) 1014 WP_013353062.1 cell shape-determining protein MreB -
  VXF94_RS17885 (VXF94_17885) mreC 3468845..3469708 (+) 864 WP_013353061.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26869.51 Da        Isoelectric Point: 9.0703

>NTDB_id=932230 VXF94_RS17860 WP_013353066.1 3464392..3465144(+) (comC) [Bacillus amyloliquefaciens strain Fad 108]
MLLILFLLGLIFGSFFYTAACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYVLQKGRCRNCRGKLSIMYPAAECWTA
CLFTAAGIHFGFSRELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLLIVGRIFSPLDSWYAGFAGAVCGFFLLIFI
MFVSKGGIGAGDVKLFGVIGLALGVKLVLIAFFLSVIIGAVYGMCAAAGGRLGKKQPFPFAPAIAAGSAVSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=932230 VXF94_RS17860 WP_013353066.1 3464392..3465144(+) (comC) [Bacillus amyloliquefaciens strain Fad 108]
GTGCTTTTGATTCTGTTTTTGCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGGAT
CTCGGTTATTTCGCCGCGCTCATCCTGTTCCTTTTGCGGCCTGCCGCTCTCCTGGGGTGAGCTGGTGCCCGTCGTTTCTT
ATGTCCTGCAAAAAGGGAGATGCAGAAACTGCCGTGGGAAGCTGTCGATTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTTACGGCTGCCGGTATTCATTTCGGTTTCTCAAGAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTATTAAT
GATTGTTACCGTGACAGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTGCCGCTTCTCATCGTCG
GCCGTATTTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTATTTTTATT
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTCATCGGCCTTGCGCTCGGCGTGAAGCT
CGTACTCATTGCATTCTTTCTTTCCGTTATAATCGGAGCCGTATACGGGATGTGCGCCGCAGCGGGCGGCAGGCTTGGTA
AAAAGCAGCCTTTCCCGTTTGCGCCCGCCATCGCGGCCGGGAGCGCTGTGAGTTATTTATACGGTGAAGAACTGTTTTCG
TTTTACATCAAACTCGCTTCCGGAGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.677

99.2

0.592