Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   VXF94_RS10870 Genome accession   NZ_CP143956
Coordinates   2132542..2133654 (-) Length   370 a.a.
NCBI ID   WP_013350724.1    Uniprot ID   A0AAE2NV61
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2127542..2138654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS10855 (VXF94_10855) gyrA 2127630..2130089 (-) 2460 WP_013350726.1 DNA gyrase subunit A -
  VXF94_RS10860 (VXF94_10860) gyrB 2130306..2132222 (-) 1917 WP_014469589.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  VXF94_RS10865 (VXF94_10865) remB 2132279..2132524 (-) 246 WP_004392908.1 extracellular matrix regulator RemB -
  VXF94_RS10870 (VXF94_10870) recF 2132542..2133654 (-) 1113 WP_013350724.1 DNA replication/repair protein RecF Machinery gene
  VXF94_RS10875 (VXF94_10875) rlbA 2133670..2133885 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  VXF94_RS10880 (VXF94_10880) dnaN 2134025..2135161 (-) 1137 WP_014469588.1 DNA polymerase III subunit beta -
  VXF94_RS10885 (VXF94_10885) dnaA 2135347..2136687 (-) 1341 WP_013350722.1 chromosomal replication initiator protein DnaA -
  VXF94_RS10890 (VXF94_10890) rpmH 2137309..2137443 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  VXF94_RS10895 (VXF94_10895) rnpA 2137596..2137946 (+) 351 WP_013354275.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42414.36 Da        Isoelectric Point: 7.0883

>NTDB_id=932209 VXF94_RS10870 WP_013350724.1 2132542..2133654(-) (recF) [Bacillus amyloliquefaciens strain Fad 108]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=932209 VXF94_RS10870 WP_013350724.1 2132542..2133654(-) (recF) [Bacillus amyloliquefaciens strain Fad 108]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTTCTTTCGATGGCAAAATCGCACCGCA
CCTCAAATGATAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTGGTCATCTCCAAAAAAGGTAAAAAGGGCAAAGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGACTTAAATCTCGTTAAAGGCAGCCCTCAGGTGAGGAGGAGAT
TTCTTGATATGGAGATCGGGCAGGTATCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCCCAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCGAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCACAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAGGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGGCCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTAATTCATGAAGAAATCGGAGAATATCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGCCAGTCCCATTTGCTTCATACAATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGTGT
GGATGGCATTGACCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.865

100

0.949