Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VXF94_RS10640 Genome accession   NZ_CP143956
Coordinates   2090844..2091134 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2085844..2096134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS10625 (VXF94_10625) - 2086072..2087391 (-) 1320 WP_014471348.1 G5 and 3D domain-containing protein -
  VXF94_RS10630 (VXF94_10630) - 2087526..2088293 (-) 768 WP_014469598.1 TatD family hydrolase -
  VXF94_RS10635 (VXF94_10635) metG 2088370..2090361 (-) 1992 WP_014469597.1 methionine--tRNA ligase -
  VXF94_RS10640 (VXF94_10640) abrB 2090844..2091134 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  VXF94_RS10645 (VXF94_10645) rsmI 2091184..2092065 (-) 882 WP_013350751.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  VXF94_RS10650 (VXF94_10650) - 2092040..2092339 (-) 300 WP_013350750.1 GIY-YIG nuclease family protein -
  VXF94_RS10655 (VXF94_10655) - 2092326..2093069 (-) 744 WP_013350749.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  VXF94_RS10660 (VXF94_10660) yabA 2093130..2093489 (-) 360 WP_013350748.1 replication initiation-control protein YabA -
  VXF94_RS10665 (VXF94_10665) ricT 2093504..2094331 (-) 828 WP_013350747.1 competence/sporulation regulator complex protein RicT -
  VXF94_RS10670 (VXF94_10670) holB 2094334..2095323 (-) 990 WP_013350746.1 DNA polymerase III subunit delta' -
  VXF94_RS10675 (VXF94_10675) - 2095335..2095775 (-) 441 WP_013350745.1 YaaR family protein -
  VXF94_RS10680 (VXF94_10680) darA 2095788..2096117 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=932207 VXF94_RS10640 WP_169510469.1 2090844..2091134(+) (abrB) [Bacillus amyloliquefaciens strain Fad 108]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=932207 VXF94_RS10640 WP_169510469.1 2090844..2091134(+) (abrB) [Bacillus amyloliquefaciens strain Fad 108]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979