Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   VXF94_RS05395 Genome accession   NZ_CP143956
Coordinates   1087078..1087656 (-) Length   192 a.a.
NCBI ID   WP_013351744.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1082078..1092656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS05365 (VXF94_05365) - 1082123..1083592 (+) 1470 WP_013351749.1 sodium:solute symporter family protein -
  VXF94_RS05370 (VXF94_05370) - 1083634..1083951 (+) 318 WP_003155166.1 YbjQ family protein -
  VXF94_RS05375 (VXF94_05375) - 1083983..1084252 (-) 270 WP_013351748.1 excalibur calcium-binding domain-containing protein -
  VXF94_RS05380 (VXF94_05380) - 1084448..1085158 (+) 711 WP_014470007.1 YrpD family protein -
  VXF94_RS05385 (VXF94_05385) eis 1085312..1086523 (+) 1212 WP_013351746.1 enhanced intracellular survival protein Eis -
  VXF94_RS05390 (VXF94_05390) - 1086560..1086931 (-) 372 WP_013351745.1 iron chaperone -
  VXF94_RS05395 (VXF94_05395) comK 1087078..1087656 (-) 579 WP_013351744.1 competence protein ComK Regulator
  VXF94_RS05400 (VXF94_05400) - 1087972..1088205 (+) 234 WP_013351743.1 IDEAL domain-containing protein -
  VXF94_RS05405 (VXF94_05405) - 1088235..1089092 (-) 858 WP_013351742.1 SDR family oxidoreductase -
  VXF94_RS05410 (VXF94_05410) - 1089216..1090739 (+) 1524 Protein_1080 FAD-dependent oxidoreductase -
  VXF94_RS21520 - 1090973..1091347 (+) 375 Protein_1081 protoglobin domain-containing protein -
  VXF94_RS21525 - 1091357..1092154 (+) 798 WP_404833629.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22287.57 Da        Isoelectric Point: 8.1411

>NTDB_id=932195 VXF94_RS05395 WP_013351744.1 1087078..1087656(-) (comK) [Bacillus amyloliquefaciens strain Fad 108]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=932195 VXF94_RS05395 WP_013351744.1 1087078..1087656(-) (comK) [Bacillus amyloliquefaciens strain Fad 108]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATTGACAGAA
GCTGCCGCTACTTTGGCTCAAGCTATGCCGGGAGAAAAGCGGGAACGTATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCAGCACGGCCTCAATGCGGCTGGATATCTCA
CGTGCACGTTAAAGATTTTCAGCCGACCGCATTTGATGACACGGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTACCATTCTTTTGAAAACCAAGTCTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCGAAGCGGCAGGAATTCATGCTGTACCCGAAAGAAGAGCGGACGAAAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828