Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VXF94_RS03375 Genome accession   NZ_CP143956
Coordinates   719144..719428 (-) Length   94 a.a.
NCBI ID   WP_013352109.1    Uniprot ID   A0AAP7NBF5
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 714144..724428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS03355 (VXF94_03355) ade 714249..715982 (-) 1734 WP_013352112.1 adenine deaminase -
  VXF94_RS03360 (VXF94_03360) ktrC 716132..716797 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  VXF94_RS03365 (VXF94_03365) - 716838..717665 (-) 828 WP_013352111.1 gamma-glutamylcyclotransferase -
  VXF94_RS03370 (VXF94_03370) - 717667..718971 (-) 1305 WP_013352110.1 ATP-binding protein -
  VXF94_RS03375 (VXF94_03375) abrB 719144..719428 (-) 285 WP_013352109.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  VXF94_RS03380 (VXF94_03380) mreBH 719697..720704 (+) 1008 WP_013352108.1 cell shape-determining protein MreBH -
  VXF94_RS03385 (VXF94_03385) - 720775..720909 (+) 135 WP_013352107.1 protein YkpC -
  VXF94_RS03390 (VXF94_03390) - 721010..722242 (+) 1233 WP_013352106.1 aminopeptidase -
  VXF94_RS03395 (VXF94_03395) - 722273..723181 (-) 909 WP_013352105.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10542.41 Da        Isoelectric Point: 5.2168

>NTDB_id=932184 VXF94_RS03375 WP_013352109.1 719144..719428(-) (abrB) [Bacillus amyloliquefaciens strain Fad 108]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPDNQEYGNGKIILSPEGAK
MLLEEIEEALKDKS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=932184 VXF94_RS03375 WP_013352109.1 719144..719428(-) (abrB) [Bacillus amyloliquefaciens strain Fad 108]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAACTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGAGAAATTACCCCTGATAATCAGGAGTACGGCAACGGTAAAATCATCTTAAGCCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCATTAAAAGATAAATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

97.872

0.553