Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VXF94_RS02340 Genome accession   NZ_CP143956
Coordinates   512015..512914 (-) Length   299 a.a.
NCBI ID   WP_013352246.1    Uniprot ID   A0A9P1JH57
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 507015..517914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS02325 (VXF94_02325) xerC 507399..508316 (-) 918 WP_013352249.1 tyrosine recombinase XerC -
  VXF94_RS02330 (VXF94_02330) trmFO 508386..509693 (-) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  VXF94_RS02335 (VXF94_02335) topA 509758..511833 (-) 2076 WP_014470402.1 type I DNA topoisomerase -
  VXF94_RS02340 (VXF94_02340) dprA 512015..512914 (-) 900 WP_013352246.1 DNA-processing protein DprA Machinery gene
  VXF94_RS02345 (VXF94_02345) sucD 512980..513882 (-) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  VXF94_RS02350 (VXF94_02350) sucC 513911..515068 (-) 1158 WP_013352244.1 ADP-forming succinate--CoA ligase subunit beta -
  VXF94_RS02355 (VXF94_02355) - 515243..515524 (-) 282 WP_013352243.1 FlhB-like flagellar biosynthesis protein -
  VXF94_RS02360 (VXF94_02360) - 515521..517224 (-) 1704 WP_014470403.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32875.04 Da        Isoelectric Point: 9.4258

>NTDB_id=932183 VXF94_RS02340 WP_013352246.1 512015..512914(-) (dprA) [Bacillus amyloliquefaciens strain Fad 108]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLRDPHPLTVLSEGKTAPKAIFREIERKEPELDKVLSDYRREGSTVI
PISSSRYPSWLKTIYDPPAVLFAKGHTSLLEKGRKIGIVGTRKPTEDGIKAVGHLTAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARGVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=932183 VXF94_RS02340 WP_013352246.1 512015..512914(-) (dprA) [Bacillus amyloliquefaciens strain Fad 108]
TTGGATCAAGCGTCGCGCTGTTTAATGGTCTGCAGTATCAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACGAGATCCGCATCCATTAACTGTTTTGTCAGAAGGGAAAACAGCTCCGAAAGCAA
TTTTTCGAGAAATAGAGCGCAAGGAACCGGAACTTGATAAAGTTCTGTCCGATTACCGCCGAGAAGGCAGTACTGTCATC
CCGATTTCATCAAGCCGCTATCCTTCATGGCTTAAAACAATTTATGATCCGCCGGCTGTCTTGTTTGCAAAAGGGCATAC
GTCACTTCTTGAAAAAGGCAGAAAAATAGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTACCGCTGAACTCTCAAAAAAAGGCTGGGTCATAGTAAGCGGGCTGGCATCCGGCATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTAATAGCCGGCGGATTCCATCATATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATATATGGCTGAACATCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAGTGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGATTAAGTGAAGGAATTGTAGTTGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACGGCTTATCAAGCCCTTGATCAAGGGAGAGAGGTATTTGCCGTTCCCGGTTCCATTTTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCGGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGAGGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

71.237

100

0.712
  dprA Lactococcus lactis subsp. cremoris KW2

41.935

93.311

0.391