Detailed information NTG0932147

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: V3C14_RS12380
• Genome accession: NZ_CP143947
• Coordinates: 2440205..2441575 (-)
• Length: 456 a.a.
• NCBI ID: WP_012743133.1
• Uniprot ID: C4ZD75
• Organism: Agathobacter rectalis strain DFI.5.28
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2435205..2446575

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V3C14_RS12380 (V3C14_12430)	radA	2440205..2441575 (-)	1371	WP_012743133.1	DNA repair protein RadA	Machinery gene
V3C14_RS12385 (V3C14_12435)	-	2441633..2442046 (-)	414	WP_012743134.1	hypothetical protein	-
V3C14_RS12390 (V3C14_12440)	-	2442094..2444550 (-)	2457	WP_012743135.1	ATP-dependent Clp protease ATP-binding subunit	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 49405.08 Da
• Isoelectric Point: 6.3675

>NTDB_id=932147 V3C14_RS12380 WP_012743133.1 2440205..2441575(-) (radA) [Agathobacter rectalis strain DFI.5.28]
MAKGKTSVFFCQECGYESAKWMGQCPACKEWNTFVEETVDKKSISSSGKVKKESKAAQVLPLSAVKSEKEERIVTGIAEF
DRVLGGGIVRGSLVLVGGDPGIGKSTLLLQVCRELSQKKVPLLYVSGEESLHQIKMRADRLGDFTDSLELLCETSLDIAK
DVIQRKKPEVVVIDSIQTMYNEEIASAPGSVSQVRETTGVLMQLAKTLGISVFIVGHVTKDGAVAGPRTLEHMVDTVLYF
EGDRYESYRILRGVKNRFGSTNEIGVFEMKAEGLVEVENPSEYMLSGKPEGASGSIVTCSIEGSRPILLEIQALVCHSFF
NNPRRTANGTDYNKVNLLMAVLEKRANLSLSDCDAYVNIAGGIRMNEPAIDLGIVLAIASSKKDIIVREDTICFGEVGLS
GEVRGVTMSEQRVAEAKKLGFKKCIVPKVCLAGVSHISGIEIVGVANIKEAIDAVR

Nucleotide

• Length: 1371 bp

>NTDB_id=932147 V3C14_RS12380 WP_012743133.1 2440205..2441575(-) (radA) [Agathobacter rectalis strain DFI.5.28]
ATGGCAAAAGGAAAGACCTCTGTATTTTTCTGCCAGGAATGTGGTTATGAATCGGCAAAATGGATGGGACAGTGCCCGGC
CTGTAAGGAATGGAATACATTTGTAGAGGAAACCGTAGATAAAAAGTCGATAAGCTCGTCGGGAAAAGTAAAAAAAGAAT
CAAAGGCGGCACAGGTTCTGCCTCTTTCGGCAGTAAAAAGCGAGAAAGAGGAGCGTATAGTGACAGGTATAGCCGAGTTT
GACAGAGTGCTTGGTGGAGGAATTGTGAGGGGGTCACTTGTGCTTGTGGGAGGAGATCCGGGTATAGGAAAATCCACGCT
ACTACTTCAGGTATGCAGGGAGCTTTCACAAAAAAAGGTGCCATTACTTTATGTGTCAGGTGAGGAATCCCTGCATCAGA
TAAAGATGCGTGCCGACAGACTTGGCGATTTTACGGATTCACTGGAGCTTTTATGTGAGACAAGTCTTGATATAGCAAAA
GACGTGATTCAACGAAAAAAACCGGAGGTTGTTGTAATAGATTCCATCCAGACTATGTACAATGAGGAGATAGCGTCGGC
ACCGGGCAGTGTCTCACAGGTCAGGGAGACAACCGGAGTGCTTATGCAGCTTGCAAAGACTCTGGGTATTTCTGTCTTTA
TAGTAGGACATGTGACAAAGGATGGTGCGGTTGCGGGGCCGAGGACGTTAGAGCATATGGTTGATACTGTGCTTTATTTT
GAGGGTGACAGGTATGAGTCGTACAGGATACTTAGAGGCGTTAAGAACAGATTTGGTTCGACCAATGAGATAGGCGTATT
TGAAATGAAGGCGGAGGGACTTGTTGAGGTGGAAAATCCGTCGGAGTATATGCTTAGCGGTAAGCCCGAGGGAGCATCAG
GATCAATTGTCACATGTTCCATAGAGGGAAGCCGCCCGATACTTCTCGAGATACAGGCTCTTGTATGTCACAGCTTTTTT
AATAATCCAAGGCGTACAGCAAATGGTACAGATTATAATAAAGTAAATCTACTCATGGCGGTCCTTGAAAAAAGAGCCAA
CCTGTCACTGTCAGACTGTGACGCTTATGTGAATATAGCAGGCGGTATAAGGATGAACGAACCGGCGATAGACCTTGGGA
TAGTGCTTGCAATCGCATCAAGCAAAAAGGATATTATAGTGCGTGAGGATACCATATGCTTTGGAGAGGTGGGCTTAAGC
GGAGAGGTGCGCGGAGTTACCATGTCCGAGCAGCGTGTTGCTGAGGCAAAGAAGCTTGGCTTTAAAAAGTGTATTGTTCC
CAAAGTGTGTCTTGCAGGAGTCTCGCATATTAGTGGAATTGAGATTGTCGGTGTGGCAAATATCAAGGAAGCGATAGATG
CTGTCAGATAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (348-428)

• AAA domain (AAA_25) (71-222)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

3D structure

• AlphaFold DB: C4ZD75

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	57.174	99.342	0.568
radA	Streptococcus mitis NCTC 12261	52.941	100	0.533
radA	Streptococcus mitis SK321	52.941	100	0.533
radA	Streptococcus pneumoniae Rx1	52.941	100	0.533
radA	Streptococcus pneumoniae D39	52.941	100	0.533
radA	Streptococcus pneumoniae R6	52.941	100	0.533
radA	Streptococcus pneumoniae TIGR4	52.941	100	0.533