Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ACB331_RS04660 Genome accession   NZ_CP167124
Coordinates   922386..923456 (-) Length   356 a.a.
NCBI ID   WP_371812562.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 917386..928456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB331_RS04640 (ACB331_04645) citX 917966..918544 (+) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -
  ACB331_RS04645 (ACB331_04650) - 918559..919953 (+) 1395 WP_011285541.1 oxaloacetate decarboxylase subunit alpha -
  ACB331_RS04650 (ACB331_04655) citC 920063..921115 (-) 1053 WP_011017789.1 [citrate (pro-3S)-lyase] ligase -
  ACB331_RS04655 (ACB331_04660) - 921204..921686 (-) 483 WP_010922334.1 PASTA domain-containing protein -
  ACB331_RS04660 (ACB331_04665) xerS 922386..923456 (-) 1071 WP_371812562.1 tyrosine recombinase XerS Machinery gene
  ACB331_RS04665 (ACB331_04670) - 923925..924623 (+) 699 WP_002993300.1 S24 family peptidase -
  ACB331_RS04670 (ACB331_04675) ffh 924740..926302 (-) 1563 WP_011285545.1 signal recognition particle protein -
  ACB331_RS04675 (ACB331_04680) - 926317..926649 (-) 333 WP_002989745.1 putative DNA-binding protein -
  ACB331_RS04680 (ACB331_04685) - 926747..927445 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41499.62 Da        Isoelectric Point: 9.5552

>NTDB_id=932136 ACB331_RS04660 WP_371812562.1 922386..923456(-) (xerS) [Streptococcus pyogenes strain Isolate 13]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKVEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=932136 ACB331_RS04660 WP_371812562.1 922386..923456(-) (xerS) [Streptococcus pyogenes strain Isolate 13]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCCTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGTTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.618

100

0.806