Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V2191_RS17975 Genome accession   NZ_CP143907
Coordinates   3840579..3841214 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain PA7_SE3_14.22_ST654_NDM1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3835579..3846214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2191_RS17960 (V2191_17960) - 3836284..3837528 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  V2191_RS17965 (V2191_17965) - 3837616..3838149 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  V2191_RS17970 (V2191_17970) - 3838280..3840506 (+) 2227 Protein_3538 DNA internalization-related competence protein ComEC/Rec2 -
  V2191_RS17975 (V2191_17975) exbB 3840579..3841214 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V2191_RS17980 (V2191_17980) - 3841211..3841651 (+) 441 WP_034037427.1 ExbD/TolR family protein -
  V2191_RS17985 (V2191_17985) lpxK 3841651..3842649 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  V2191_RS17990 (V2191_17990) - 3842687..3842872 (+) 186 WP_003091157.1 Trm112 family protein -
  V2191_RS17995 (V2191_17995) kdsB 3842872..3843636 (+) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V2191_RS18000 (V2191_18000) - 3843636..3844100 (+) 465 WP_034037425.1 low molecular weight protein-tyrosine-phosphatase -
  V2191_RS18005 (V2191_18005) murB 3844097..3845116 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=931968 V2191_RS17975 WP_003091163.1 3840579..3841214(+) (exbB) [Pseudomonas aeruginosa strain PA7_SE3_14.22_ST654_NDM1]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=931968 V2191_RS17975 WP_003091163.1 3840579..3841214(+) (exbB) [Pseudomonas aeruginosa strain PA7_SE3_14.22_ST654_NDM1]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81