Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JPge_RS05975 Genome accession   NZ_AP025624
Coordinates   1143900..1144949 (+) Length   349 a.a.
NCBI ID   WP_017437013.1    Uniprot ID   A0A023DBW0
Organism   Saccharococcus caldoxylosilyticus strain KH1-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1138900..1149949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JPge_RS05945 (PcaKH16_11230) ymfI 1138957..1139673 (+) 717 WP_017437019.1 elongation factor P 5-aminopentanone reductase -
  JPge_RS05950 (PcaKH16_11240) - 1139735..1139986 (+) 252 WP_017437018.1 DUF3243 domain-containing protein -
  JPge_RS05955 (PcaKH16_11250) - 1140129..1140920 (+) 792 WP_218687742.1 DUF3388 domain-containing protein -
  JPge_RS05960 (PcaKH16_11260) - 1140945..1141823 (+) 879 WP_017437016.1 helix-turn-helix domain-containing protein -
  JPge_RS05965 (PcaKH16_11270) pgsA 1141874..1142452 (+) 579 WP_042407054.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JPge_RS05970 (PcaKH16_11280) cinA 1142489..1143733 (+) 1245 WP_244404681.1 competence/damage-inducible protein A Machinery gene
  JPge_RS05975 (PcaKH16_11290) recA 1143900..1144949 (+) 1050 WP_017437013.1 recombinase RecA Machinery gene
  JPge_RS05980 (PcaKH16_11300) rny 1145408..1146964 (+) 1557 WP_017437012.1 ribonuclease Y -
  JPge_RS05985 (PcaKH16_11310) - 1147051..1147845 (+) 795 WP_042407048.1 TIGR00282 family metallophosphoesterase -
  JPge_RS05990 (PcaKH16_11320) spoVS 1147975..1148235 (+) 261 WP_003251598.1 stage V sporulation protein SpoVS -
  JPge_RS05995 (PcaKH16_11330) - 1148329..1149246 (+) 918 WP_042411968.1 dipeptidase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37899.06 Da        Isoelectric Point: 5.1993

>NTDB_id=93192 JPge_RS05975 WP_017437013.1 1143900..1144949(+) (recA) [Saccharococcus caldoxylosilyticus strain KH1-6]
MNQDRQAALEQALKQIEKQFGKGSIMRLGEQTDRKISTVSSGSLALDIALGVGGYPRGRIVEIYGPESSGKTTVALHAIA
EVQKQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKLSGAINKSKAIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNK
TKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAEEIAQ
EIRKHYGIESSSANSVGELQQDEFGLLED

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=93192 JPge_RS05975 WP_017437013.1 1143900..1144949(+) (recA) [Saccharococcus caldoxylosilyticus strain KH1-6]
GTGAATCAAGACCGTCAAGCCGCCTTAGAGCAGGCGTTGAAACAGATTGAAAAGCAGTTTGGCAAAGGCTCGATTATGAG
GCTTGGTGAGCAGACAGATCGCAAAATTTCCACTGTCTCCAGTGGATCGCTGGCGCTTGATATCGCTTTAGGAGTGGGCG
GCTATCCGCGCGGGCGCATTGTTGAAATATATGGACCTGAATCTTCAGGGAAAACGACCGTTGCCCTTCATGCGATTGCC
GAAGTGCAGAAGCAAGGGGGACAAGCGGCATTTATTGATGCAGAGCATGCGCTTGATCCGGTTTATGCGCAAAAATTAGG
CGTCAATATCGATGAGTTGCTGCTGTCTCAGCCAGATACGGGCGAGCAGGCGCTCGAAATCGCGGAAGCGTTAGTGAGAA
GCGGTGCGGTTGACATTATTGTCATTGACTCCGTTGCGGCGCTGGTGCCAAAAGCGGAAATTGAAGGGGAAATGGGCGAC
GCCCACGTTGGTTTGCAGGCGCGCTTGATGTCGCAAGCGTTGCGCAAATTATCAGGAGCGATTAATAAGTCAAAGGCGAT
CGCCATTTTCATCAACCAAATTCGCGAAAAAGTCGGAGTCATGTTTGGCAATCCGGAGACAACGCCAGGCGGCCGCGCGT
TAAAATTTTATGCTTCCGTCCGCCTAGAAGTGCGCCGTGCTGAGCAAATCAAGCAAGGTAACGATATGGTGGGAAATAAA
ACGAAAATTAAAGTTGTGAAAAATAAAGTGGCTCCGCCATTTAAAACAGCGGACGTAGATATTATGTACGGAGAAGGCAT
TTCCCGCGAAGGCGAAATTATCGATATGGCATCGGAGCTTGATATCGTGCAAAAAAGCGGTTCGTGGTACTCCTATAAAG
ACGAGCGCCTTGGCCAAGGGCGGGAAAATGCGAAACAGTTTTTAAAAGAAAATCCGCATATTGCCGAAGAAATTGCCCAA
GAAATCCGCAAACATTACGGCATTGAATCTTCTAGTGCTAACAGTGTCGGCGAATTGCAGCAAGACGAGTTTGGGCTTTT
GGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A023DBW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.89

93.983

0.817
  recA Latilactobacillus sakei subsp. sakei 23K

73.988

99.14

0.734
  recA Streptococcus pneumoniae Rx1

71.429

94.269

0.673
  recA Streptococcus pneumoniae D39

71.429

94.269

0.673
  recA Streptococcus mitis NCTC 12261

71.429

94.269

0.673
  recA Streptococcus pneumoniae R6

71.429

94.269

0.673
  recA Streptococcus pneumoniae TIGR4

71.429

94.269

0.673
  recA Streptococcus mitis SK321

71.125

94.269

0.67
  recA Streptococcus mutans UA159

70.213

94.269

0.662
  recA Lactococcus lactis subsp. cremoris KW2

68.769

95.415

0.656
  recA Streptococcus pyogenes NZ131

69.817

93.983

0.656
  recA Ralstonia pseudosolanacearum GMI1000

67.492

92.55

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.45

97.994

0.622
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.358

92.837

0.616
  recA Vibrio cholerae strain A1552

66.358

92.837

0.616
  recA Glaesserella parasuis strain SC1401

64.072

95.702

0.613
  recA Acinetobacter baylyi ADP1

61.494

99.713

0.613
  recA Neisseria gonorrhoeae MS11

64.242

94.556

0.607
  recA Neisseria gonorrhoeae strain FA1090

64.242

94.556

0.607
  recA Neisseria gonorrhoeae MS11

64.242

94.556

0.607
  recA Pseudomonas stutzeri DSM 10701

62.798

96.275

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.134

94.269

0.605
  recA Acinetobacter baumannii D1279779

64.923

93.123

0.605
  recA Helicobacter pylori strain NCTC11637

62.805

93.983

0.59
  recA Helicobacter pylori 26695

62.805

93.983

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.091

90.831

0.573

Multiple sequence alignment