Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   V2195_RS08750 Genome accession   NZ_CP143903
Coordinates   1804342..1804899 (+) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA13_L17_27.22_ST207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1799342..1809899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2195_RS08730 (V2195_08730) pilR 1800618..1801955 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  V2195_RS08735 (V2195_08735) thiO 1802001..1803095 (-) 1095 WP_033995405.1 glycine oxidase ThiO -
  V2195_RS08740 (V2195_08740) - 1803230..1803739 (+) 510 WP_003134932.1 GspH/FimT family pseudopilin -
  V2195_RS08745 (V2195_08745) - 1803845..1804351 (+) 507 WP_023098086.1 GspH/FimT family pseudopilin -
  V2195_RS08750 (V2195_08750) pilV 1804342..1804899 (+) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  V2195_RS08755 (V2195_08755) pilW 1804896..1805720 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  V2195_RS08760 (V2195_08760) pilX 1805717..1806304 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  V2195_RS08765 (V2195_08765) pilY1 1806316..1809801 (+) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=931888 V2195_RS08750 WP_003110422.1 1804342..1804899(+) (pilV) [Pseudomonas aeruginosa strain PA13_L17_27.22_ST207]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=931888 V2195_RS08750 WP_003110422.1 1804342..1804899(+) (pilV) [Pseudomonas aeruginosa strain PA13_L17_27.22_ST207]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984