Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   V2197_RS18240 Genome accession   NZ_CP143901
Coordinates   3883864..3884421 (-) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA12_L1_25.22_ST207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3878864..3889421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2197_RS18225 (V2197_18225) pilY1 3878962..3882447 (-) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -
  V2197_RS18230 (V2197_18230) pilX 3882459..3883046 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  V2197_RS18235 (V2197_18235) pilW 3883043..3883867 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  V2197_RS18240 (V2197_18240) pilV 3883864..3884421 (-) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  V2197_RS18245 (V2197_18245) - 3884412..3884918 (-) 507 WP_023098086.1 GspH/FimT family pseudopilin -
  V2197_RS18250 (V2197_18250) - 3885024..3885533 (-) 510 WP_003134932.1 GspH/FimT family pseudopilin -
  V2197_RS18255 (V2197_18255) thiO 3885668..3886762 (+) 1095 WP_033995405.1 glycine oxidase ThiO -
  V2197_RS18260 (V2197_18260) pilR 3886808..3888145 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=931866 V2197_RS18240 WP_003110422.1 3883864..3884421(-) (pilV) [Pseudomonas aeruginosa strain PA12_L1_25.22_ST207]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=931866 V2197_RS18240 WP_003110422.1 3883864..3884421(-) (pilV) [Pseudomonas aeruginosa strain PA12_L1_25.22_ST207]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984