Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACB339_RS07395 Genome accession   NZ_CP167023
Coordinates   1390187..1390795 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain Isolate 3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1385187..1395795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB339_RS07365 (ACB339_07360) - 1385437..1385919 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  ACB339_RS07370 (ACB339_07365) - 1386064..1387533 (-) 1470 WP_011054842.1 cell division site-positioning protein MapZ family protein -
  ACB339_RS07375 (ACB339_07370) - 1387547..1388701 (-) 1155 WP_002988932.1 class I SAM-dependent RNA methyltransferase -
  ACB339_RS07385 (ACB339_07380) gpsB 1389146..1389472 (-) 327 WP_002983626.1 cell division regulator GpsB -
  ACB339_RS07390 (ACB339_07385) - 1389591..1390106 (-) 516 WP_002994217.1 DUF1273 domain-containing protein -
  ACB339_RS07395 (ACB339_07390) recU 1390187..1390795 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  ACB339_RS07400 (ACB339_07395) pbp1a 1390782..1392947 (+) 2166 WP_011054843.1 penicillin-binding protein PBP1A -
  ACB339_RS07405 (ACB339_07400) pepC 1393414..1394751 (-) 1338 WP_011054844.1 aminopeptidase C -
  ACB339_RS07410 (ACB339_07405) nadE 1394936..1395760 (-) 825 WP_011054845.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=931693 ACB339_RS07395 WP_002983622.1 1390187..1390795(+) (recU) [Streptococcus pyogenes strain Isolate 3]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=931693 ACB339_RS07395 WP_002983622.1 1390187..1390795(+) (recU) [Streptococcus pyogenes strain Isolate 3]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAGCGCAGTCGGGCAAAAATCGTTGAAGCATACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5