Detailed information    

insolico Bioinformatically predicted

Overview


Name   irvR   Type   Regulator
Locus tag   ACB339_RS05285 Genome accession   NZ_CP167023
Coordinates   1016057..1016845 (+) Length   262 a.a.
NCBI ID   WP_021340822.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 3     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1011057..1021845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB339_RS05230 (ACB339_05225) - 1011673..1011987 (-) 315 WP_011054583.1 helix-turn-helix transcriptional regulator -
  ACB339_RS05235 (ACB339_05230) - 1012003..1012137 (-) 135 WP_002995985.1 hypothetical protein -
  ACB339_RS05240 (ACB339_05235) - 1012134..1012430 (-) 297 WP_011054584.1 MerR family transcriptional regulator -
  ACB339_RS05245 (ACB339_05240) - 1012508..1012693 (-) 186 WP_011054585.1 helix-turn-helix transcriptional regulator -
  ACB339_RS05250 (ACB339_05245) - 1012860..1013099 (+) 240 WP_011054586.1 hypothetical protein -
  ACB339_RS05255 (ACB339_05250) - 1013250..1013459 (+) 210 WP_002984292.1 hypothetical protein -
  ACB339_RS05260 (ACB339_05255) - 1013675..1013914 (-) 240 WP_011054588.1 helix-turn-helix transcriptional regulator -
  ACB339_RS05265 (ACB339_05260) - 1013988..1014374 (+) 387 WP_011054589.1 hypothetical protein -
  ACB339_RS05270 (ACB339_05265) - 1014363..1014569 (-) 207 WP_011054590.1 hypothetical protein -
  ACB339_RS05275 (ACB339_05270) - 1014626..1015405 (+) 780 WP_011054591.1 hypothetical protein -
  ACB339_RS05280 (ACB339_05275) - 1015539..1015685 (-) 147 WP_011054593.1 hypothetical protein -
  ACB339_RS05285 (ACB339_05280) irvR 1016057..1016845 (+) 789 WP_021340822.1 S24 family peptidase Regulator
  ACB339_RS05290 (ACB339_05285) - 1016855..1017160 (+) 306 WP_011106738.1 membrane protein -
  ACB339_RS05295 (ACB339_05290) - 1017280..1018368 (+) 1089 WP_011054595.1 site-specific integrase -
  ACB339_RS05300 (ACB339_05295) - 1018731..1019351 (+) 621 WP_011054596.1 DUF3862 domain-containing protein -

Sequence


Protein


Download         Length: 262 a.a.        Molecular weight: 29992.22 Da        Isoelectric Point: 9.0535

>NTDB_id=931672 ACB339_RS05285 WP_021340822.1 1016057..1016845(+) (irvR) [Streptococcus pyogenes strain Isolate 3]
MARGRGKLTPQDEEYKKIISAKINSLLLENNLKQGHLADALEIPRSSFNEYVKGNSLPNPGNVQKIADYFGLMKSDIDPR
FAPRKKNHELKIPTSPLVKKITTTVVELKVPRKQKVLDFATEQLKEQKNKITSIEKKLYEYKVYEKLSAGTGYGYFGDGN
YDTVFYDEELDYDFASWVFGDSMEPTYLNGEVVLIKQTGFDYEGGIYAVEWDGQTYIKKVYREKGGLRLVSLNKKYNDKF
APFSEGPRIIGEIVGNFMPKEY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=931672 ACB339_RS05285 WP_021340822.1 1016057..1016845(+) (irvR) [Streptococcus pyogenes strain Isolate 3]
ATGGCAAGAGGACGAGGGAAATTAACACCTCAAGACGAGGAATACAAAAAGATAATTTCTGCTAAAATTAACAGTTTATT
GCTAGAAAACAATTTAAAACAAGGACATTTAGCTGATGCATTGGAAATTCCACGAAGTAGTTTTAATGAATATGTCAAAG
GAAATTCCTTACCTAATCCTGGTAACGTTCAAAAGATAGCTGATTATTTCGGGTTAATGAAGTCTGATATAGATCCTAGA
TTTGCACCTCGTAAGAAAAATCACGAACTCAAAATCCCTACTTCTCCACTCGTCAAAAAAATAACCACAACAGTTGTAGA
ATTAAAGGTTCCTCGTAAACAAAAAGTTTTAGACTTTGCAACAGAACAATTGAAAGAGCAAAAAAACAAAATTACTTCGA
TAGAGAAAAAACTATATGAATACAAAGTCTATGAGAAACTTTCCGCAGGTACAGGTTATGGATATTTTGGTGATGGGAAC
TATGATACTGTTTTTTACGACGAAGAATTAGATTACGATTTTGCCTCTTGGGTTTTTGGTGATTCTATGGAACCAACTTA
TCTGAATGGTGAGGTTGTGCTTATAAAACAAACTGGCTTTGATTATGAAGGTGGCATCTATGCCGTAGAGTGGGACGGAC
AAACCTATATTAAGAAAGTTTACAGAGAAAAGGGTGGCTTGCGCCTTGTGTCCTTAAATAAAAAATACAATGACAAGTTT
GCTCCTTTTAGTGAAGGCCCTCGTATAATAGGGGAAATTGTCGGTAACTTTATGCCTAAAGAGTACTGA

Domains


Predicted by InterProScan.

(168-254)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

38.158

100

0.443