Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   V2B25_RS01645 Genome accession   NZ_CP143879
Coordinates   353420..355570 (+) Length   716 a.a.
NCBI ID   WP_003641986.1    Uniprot ID   A0AAW3FTH1
Organism   Lactiplantibacillus plantarum strain IMAUJBP3     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 348420..360570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2B25_RS01615 (V2B25_01615) - 348440..350836 (+) 2397 Protein_322 MucBP domain-containing protein -
  V2B25_RS01620 (V2B25_01620) - 350917..351168 (+) 252 WP_002816285.1 IS3 family transposase -
  V2B25_RS01625 (V2B25_01625) - 351186..352064 (+) 879 WP_268164977.1 IS3 family transposase -
  V2B25_RS01630 (V2B25_01630) - 352105..352701 (-) 597 WP_330986678.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  V2B25_RS01635 (V2B25_01635) plnF 352800..352958 (-) 159 WP_003643811.1 two-peptide bacteriocin plantaricin EF subunit PlnF -
  V2B25_RS01640 (V2B25_01640) plnE 352983..353153 (-) 171 WP_063845882.1 two-peptide bacteriocin plantaricin EF subunit PlnE -
  V2B25_RS01645 (V2B25_01645) comA 353420..355570 (+) 2151 WP_003641986.1 peptide cleavage/export ABC transporter Regulator
  V2B25_RS01650 (V2B25_01650) - 355585..356961 (+) 1377 WP_063845884.1 HlyD family secretion protein -
  V2B25_RS01655 (V2B25_01655) - 357051..357740 (+) 690 WP_330986679.1 CPBP family intramembrane glutamic endopeptidase -
  V2B25_RS01660 (V2B25_01660) - 357808..358476 (+) 669 WP_063484763.1 CPBP family intramembrane glutamic endopeptidase -
  V2B25_RS01665 (V2B25_01665) - 358563..359039 (+) 477 WP_236720424.1 hypothetical protein -
  V2B25_RS01670 (V2B25_01670) - 358963..359244 (+) 282 WP_236720425.1 CPBP family intramembrane glutamic endopeptidase -
  V2B25_RS01675 (V2B25_01675) - 359338..359538 (+) 201 WP_236720426.1 hypothetical protein -
  V2B25_RS01680 (V2B25_01680) - 359555..359986 (+) 432 WP_236720427.1 CPBP family intramembrane glutamic endopeptidase -
  V2B25_RS01685 (V2B25_01685) - 360124..360327 (+) 204 WP_027821496.1 hypothetical protein -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 79952.66 Da        Isoelectric Point: 6.6531

>NTDB_id=931667 V2B25_RS01645 WP_003641986.1 353420..355570(+) (comA) [Lactiplantibacillus plantarum strain IMAUJBP3]
MHWRNYVAQVDEMDCGVAALAMILKNYGSTTSLAYLRNIAKTSLEGTTALGLVKTAEKLGFETKAIQADMSLFEVQDLPL
PFIVHVTKNGDLQHFYVVVKTSKTHVVIADPDPTVAVISMSKERFESEWSGVALFFAPKSEYKPVKQDKGSLWGFIPSLL
KQRRLVINIVLAAVLITIISICGSYFLQAVIDTYIPNNMHSTLAVVAIGLIVFYTFQAIFTYAQNFLLAVLGQRLSIEII
LGYIRHVFELPMSFFATRRTGEIVSRFTDASKIIDALASTIVSLFLDVSIVIIMGAILVIQNMTLFWITLLSLPIYAVVI
LAFNKSFERLNQKEMESNAILSSAIIEDLHGIETVKALNGETERYQKIDSEFVDYLRKSLAYLKADTLQQALKLFIQLVL
EVVVLWVGANLVIHNQLSVGELMTYNALLAYFVNPLQNIINLQTKLQSAKVANNRLNEVYLVASEFEASRPIHNESQLNG
DIKLQGVSYRYGYGENVLDDVNLTIRQHDKVAIVGMSGSGKSTLVKLLIDFYQPNSGDVILNGFNVKNIDKHTLRTHINY
IPQEPYIFSATIEENLRLGNRSGITEKDIAKACQLALIDTDINKMAMQYQTKLDENGNTLSGGQRQRLTIARALLSPAQV
LIFDESTSGLDAITEKQLIDNLVAMTDKTIIFIAHRLSIAKRTNHIIVLHDGRVAEEGTHAALLNEHGYYYDLINS

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=931667 V2B25_RS01645 WP_003641986.1 353420..355570(+) (comA) [Lactiplantibacillus plantarum strain IMAUJBP3]
ATGCATTGGAGAAACTATGTTGCGCAAGTTGACGAGATGGACTGTGGGGTCGCAGCTTTAGCAATGATTTTGAAAAATTA
TGGTTCGACAACATCATTGGCCTATCTAAGAAATATTGCTAAAACGAGTTTAGAAGGGACTACGGCATTAGGATTAGTAA
AAACGGCCGAAAAGTTAGGTTTTGAAACCAAAGCAATTCAAGCAGATATGAGTCTTTTCGAGGTACAAGATTTACCATTG
CCATTCATTGTGCATGTTACCAAAAATGGGGATCTACAGCATTTTTATGTCGTTGTAAAAACCTCGAAAACGCATGTCGT
GATTGCTGATCCGGACCCAACAGTTGCGGTTATCAGTATGTCAAAGGAACGGTTTGAAAGCGAATGGTCCGGAGTTGCCC
TTTTCTTTGCACCGAAGTCGGAATATAAGCCAGTTAAGCAAGATAAGGGCTCACTATGGGGATTTATTCCAAGCTTATTA
AAGCAGCGCCGACTGGTTATTAATATTGTGCTTGCTGCAGTTTTAATCACGATTATTAGTATCTGTGGGTCTTATTTCTT
ACAAGCGGTGATTGATACTTATATTCCCAATAATATGCACAGTACATTGGCAGTGGTGGCCATTGGTCTAATCGTTTTTT
ATACCTTTCAGGCTATCTTTACTTATGCCCAGAATTTTTTATTGGCGGTTTTAGGTCAACGACTTTCGATTGAAATTATT
TTAGGCTATATTCGGCACGTCTTTGAATTGCCAATGAGTTTTTTTGCCACTCGGCGGACGGGGGAAATTGTTTCGAGGTT
TACGGATGCCAGTAAGATTATTGATGCGTTAGCTAGCACAATTGTTTCGCTGTTTTTAGATGTCAGCATCGTTATTATTA
TGGGGGCAATCTTGGTAATCCAGAATATGACACTTTTTTGGATTACGTTACTCTCGTTGCCAATCTACGCGGTTGTCATC
TTAGCCTTTAATAAATCCTTTGAACGATTGAATCAAAAGGAAATGGAGAGCAATGCTATTTTGAGTTCAGCCATTATTGA
GGATCTTCATGGGATTGAAACTGTTAAGGCGCTGAATGGTGAGACGGAACGTTATCAGAAAATTGATTCAGAATTTGTTG
ATTATCTACGTAAGAGTTTAGCCTATCTTAAAGCGGATACTTTGCAACAGGCATTAAAACTGTTTATACAGTTAGTCTTA
GAAGTTGTTGTTCTATGGGTGGGCGCCAATCTCGTCATTCATAATCAGTTATCAGTTGGGGAGCTCATGACATATAATGC
TTTATTAGCCTATTTTGTTAATCCACTACAGAATATTATTAATTTGCAGACTAAGCTTCAAAGCGCTAAGGTCGCTAACA
ACCGGTTAAATGAAGTGTATTTGGTCGCTAGTGAATTTGAGGCGTCACGGCCAATTCATAATGAAAGTCAATTAAATGGT
GATATTAAGTTACAAGGGGTCAGCTATCGTTATGGTTACGGTGAAAATGTCTTAGATGATGTTAATTTGACGATTCGACA
ACATGATAAGGTTGCAATTGTGGGGATGAGTGGCTCTGGCAAGTCCACGTTAGTTAAATTGCTTATTGATTTTTATCAAC
CAAATAGTGGTGATGTCATATTGAATGGCTTCAACGTTAAGAACATCGATAAGCATACATTGCGGACCCATATTAACTAC
ATCCCGCAGGAACCATACATCTTTTCAGCGACCATTGAAGAAAATTTAAGATTAGGTAATCGCAGCGGTATTACTGAGAA
AGATATTGCGAAGGCTTGCCAATTGGCGTTAATTGATACGGATATTAATAAAATGGCCATGCAATACCAAACTAAGCTAG
ATGAGAATGGTAATACACTATCAGGTGGTCAGCGACAACGATTAACGATTGCGAGAGCGTTATTATCACCCGCTCAAGTC
TTGATATTTGATGAGTCGACGAGTGGACTGGATGCAATTACTGAAAAACAATTAATTGATAATTTAGTGGCAATGACTGA
CAAGACGATTATTTTTATTGCCCACCGGTTGTCGATTGCAAAGCGGACGAATCATATCATCGTTCTGCATGATGGTCGGG
TCGCTGAAGAGGGGACCCATGCGGCATTGTTGAATGAACATGGTTACTATTACGACTTGATCAATAGCTGA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(5-140)

ABC transporter transmembrane region (ABC_membrane)

(166-436)

ABC transporter (ABC_tran)

(498-648)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

58.906

99.581

0.587
  comA Streptococcus pneumoniae D39

58.626

99.581

0.584
  comA Streptococcus pneumoniae R6

58.626

99.581

0.584
  comA Streptococcus pneumoniae Rx1

58.626

99.581

0.584
  comA Streptococcus pneumoniae TIGR4

58.485

99.581

0.582
  comA Streptococcus mitis SK321

58.345

99.581

0.581
  comA Streptococcus gordonii str. Challis substr. CH1

57.103

100

0.573
  comA/nlmT Streptococcus mutans UA159

54.596

100

0.547