Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACB335_RS06645 Genome accession   NZ_CP167022
Coordinates   1315734..1316342 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain Isolate 4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1310734..1321342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB335_RS06615 (ACB335_06615) - 1310981..1311463 (+) 483 WP_031488500.1 S-ribosylhomocysteine lyase -
  ACB335_RS06620 (ACB335_06620) - 1311608..1313077 (-) 1470 WP_023079255.1 cell division site-positioning protein MapZ family protein -
  ACB335_RS06625 (ACB335_06625) - 1313091..1314245 (-) 1155 WP_011888664.1 class I SAM-dependent RNA methyltransferase -
  ACB335_RS06635 (ACB335_06635) gpsB 1314690..1315016 (-) 327 WP_031488499.1 cell division regulator GpsB -
  ACB335_RS06640 (ACB335_06640) - 1315138..1315653 (-) 516 WP_011285056.1 DUF1273 domain-containing protein -
  ACB335_RS06645 (ACB335_06645) recU 1315734..1316342 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  ACB335_RS06650 (ACB335_06650) pbp1a 1316329..1318494 (+) 2166 WP_031488498.1 penicillin-binding protein PBP1A -
  ACB335_RS06655 (ACB335_06655) pepC 1318954..1320291 (-) 1338 WP_011054844.1 aminopeptidase C -
  ACB335_RS06660 (ACB335_06660) nadE 1320476..1321300 (-) 825 WP_031488497.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=931595 ACB335_RS06645 WP_002983622.1 1315734..1316342(+) (recU) [Streptococcus pyogenes strain Isolate 4]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=931595 ACB335_RS06645 WP_002983622.1 1315734..1316342(+) (recU) [Streptococcus pyogenes strain Isolate 4]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTTGATTACCCTAAGCGCAGTCGGGCAAAAATCGTTGAAGCATACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5