Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VZG28_RS12115 Genome accession   NZ_CP143853
Coordinates   2408872..2409939 (+) Length   355 a.a.
NCBI ID   WP_208674823.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2403872..2414939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG28_RS12090 (VZG28_12090) - 2404374..2405336 (-) 963 WP_338441431.1 bile acid:sodium symporter family protein -
  VZG28_RS12095 (VZG28_12095) msrB 2405464..2405985 (+) 522 WP_208674815.1 peptide-methionine (R)-S-oxide reductase MsrB -
  VZG28_RS12100 (VZG28_12100) - 2405976..2407109 (-) 1134 WP_208674817.1 MlaD family protein -
  VZG28_RS12105 (VZG28_12105) - 2407137..2407931 (-) 795 WP_208674819.1 ATP-binding cassette domain-containing protein -
  VZG28_RS12110 (VZG28_12110) - 2408187..2408747 (+) 561 WP_208674821.1 DUF3611 family protein -
  VZG28_RS12115 (VZG28_12115) recA 2408872..2409939 (+) 1068 WP_208674823.1 recombinase RecA Machinery gene
  VZG28_RS12120 (VZG28_12120) - 2410119..2410283 (-) 165 WP_208678221.1 hypothetical protein -
  VZG28_RS12125 (VZG28_12125) pgeF 2410432..2411199 (-) 768 WP_208674827.1 peptidoglycan editing factor PgeF -
  VZG28_RS12130 (VZG28_12130) - 2411245..2412012 (+) 768 WP_338441432.1 biotin--[acetyl-CoA-carboxylase] ligase -
  VZG28_RS12135 (VZG28_12135) - 2412098..2413141 (+) 1044 WP_338441433.1 M23 family metallopeptidase -
  VZG28_RS12140 (VZG28_12140) psb27 2413231..2413632 (-) 402 WP_208674834.1 photosystem II protein Psb27 -
  VZG28_RS12145 (VZG28_12145) - 2413696..2413923 (-) 228 WP_208674836.1 hypothetical protein -
  VZG28_RS12150 (VZG28_12150) - 2414037..2414573 (-) 537 WP_338441434.1 hypothetical protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37832.31 Da        Isoelectric Point: 5.3005

>NTDB_id=931575 VZG28_RS12115 WP_208674823.1 2408872..2409939(+) (recA) [Synechococcus elongatus IITB4]
MASKSDAIAPEKEKALNLVLSQIERNFGKGAIMRLGDAARLRVETIPTGALTLDLALGGGLPKGRIIEVYGPESSGKTTL
TLHAIAEVQKQGGIAAFVDAEHALDPVYATALGVDIDNLLISQPDTGEMALEIVDQLVRSAAVDIVVIDSVAALVPRAEI
EGEMGDTQVGLQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGSPETTTGGQALKFYASVRLDIRRIQTLKKGT
EEYGTRAKVKVVKNKVAPPFRIAEFDILFGKGISTLGCLVDLAEETGVILRKGAWYSYNGDNIGQGRDNTITYLDEHPDF
RATVEQQVREKLALGAQVSANTVGAAPAAVTADED

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=931575 VZG28_RS12115 WP_208674823.1 2408872..2409939(+) (recA) [Synechococcus elongatus IITB4]
ATGGCTAGCAAATCGGACGCGATCGCTCCAGAGAAGGAAAAAGCCCTAAATCTTGTGCTCAGCCAGATTGAGCGCAACTT
TGGTAAGGGTGCCATCATGCGCCTTGGCGACGCGGCGCGGCTGCGGGTCGAAACGATTCCCACGGGGGCGCTGACCCTTG
ATCTGGCGCTGGGAGGTGGTTTGCCCAAGGGTCGGATTATCGAAGTCTATGGCCCCGAAAGCTCGGGTAAAACCACACTC
ACCTTGCATGCGATCGCCGAAGTTCAAAAGCAGGGAGGCATTGCTGCTTTTGTGGATGCTGAACACGCCCTTGATCCGGT
CTATGCCACAGCCTTAGGGGTCGACATCGATAACTTGCTGATCTCTCAGCCCGATACGGGCGAGATGGCACTGGAAATTG
TTGATCAACTGGTGCGCTCGGCAGCAGTCGACATTGTGGTGATCGACTCAGTTGCAGCCCTCGTTCCTAGGGCTGAAATT
GAAGGGGAAATGGGTGATACCCAAGTGGGTCTGCAGGCTCGCTTGATGAGCCAAGCGATGCGGAAAATTACTGGCAACAT
CGGCAAGTCAGGCTGTACAGTCATCTTCCTTAACCAGCTGCGCCAAAAGATTGGCGTCACCTACGGTAGCCCTGAGACGA
CGACCGGTGGCCAAGCCCTGAAGTTCTACGCGTCTGTTCGTCTGGATATTCGTCGGATTCAAACCCTAAAAAAAGGAACG
GAAGAATACGGCACCCGCGCCAAGGTCAAGGTTGTCAAAAACAAGGTGGCACCACCCTTCCGTATTGCCGAATTTGACAT
TCTCTTCGGCAAAGGCATTTCTACCCTCGGTTGTTTGGTTGATTTGGCCGAAGAAACTGGCGTGATCCTGCGCAAGGGCG
CTTGGTACAGCTACAACGGCGACAATATCGGCCAAGGTCGCGACAACACGATTACTTACCTAGACGAACATCCCGACTTC
CGAGCAACGGTCGAGCAGCAAGTGCGTGAAAAATTAGCTCTCGGTGCCCAAGTCTCAGCCAATACGGTTGGGGCTGCTCC
TGCTGCGGTGACAGCCGACGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

63.188

97.183

0.614
  recA Ralstonia pseudosolanacearum GMI1000

61.473

99.437

0.611
  recA Acinetobacter baylyi ADP1

66.77

90.704

0.606
  recA Acinetobacter baumannii D1279779

66.149

90.704

0.6
  recA Glaesserella parasuis strain SC1401

59.885

98.31

0.589
  recA Streptococcus pneumoniae D39

58.892

96.62

0.569
  recA Streptococcus pneumoniae Rx1

58.892

96.62

0.569
  recA Streptococcus pneumoniae R6

58.892

96.62

0.569
  recA Streptococcus pneumoniae TIGR4

58.892

96.62

0.569
  recA Neisseria gonorrhoeae strain FA1090

62.037

91.268

0.566
  recA Neisseria gonorrhoeae MS11

62.037

91.268

0.566
  recA Neisseria gonorrhoeae MS11

62.037

91.268

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

61.538

91.549

0.563
  recA Vibrio cholerae strain A1552

61.801

90.704

0.561
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

90.704

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

61.875

90.141

0.558
  recA Streptococcus mitis SK321

58.631

94.648

0.555
  recA Helicobacter pylori 26695

58.683

94.085

0.552
  recA Helicobacter pylori strain NCTC11637

58.683

94.085

0.552
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.817

95.493

0.552
  recA Streptococcus mitis NCTC 12261

58.333

94.648

0.552
  recA Lactococcus lactis subsp. cremoris KW2

59.877

91.268

0.546
  recA Streptococcus mutans UA159

58.485

92.958

0.544
  recA Streptococcus pyogenes NZ131

58.716

92.113

0.541
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.831

93.521

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

91.831

0.532