Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ACB335_RS05000 Genome accession   NZ_CP167022
Coordinates   962510..963580 (-) Length   356 a.a.
NCBI ID   WP_021733235.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 957510..968580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB335_RS04980 (ACB335_04980) citX 958089..958667 (+) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -
  ACB335_RS04985 (ACB335_04985) - 958682..960076 (+) 1395 WP_031488265.1 oxaloacetate decarboxylase subunit alpha -
  ACB335_RS04990 (ACB335_04990) citC 960186..961238 (-) 1053 WP_020905210.1 [citrate (pro-3S)-lyase] ligase -
  ACB335_RS04995 (ACB335_04995) - 961327..961809 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  ACB335_RS05000 (ACB335_05000) xerS 962510..963580 (-) 1071 WP_021733235.1 tyrosine recombinase XerS Machinery gene
  ACB335_RS05005 (ACB335_05005) - 964054..964752 (+) 699 WP_002993300.1 S24 family peptidase -
  ACB335_RS05010 (ACB335_05010) ffh 964869..966431 (-) 1563 WP_031488264.1 signal recognition particle protein -
  ACB335_RS05015 (ACB335_05015) - 966446..966778 (-) 333 WP_002989745.1 putative DNA-binding protein -
  ACB335_RS05020 (ACB335_05020) - 966876..967574 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41471.61 Da        Isoelectric Point: 9.6220

>NTDB_id=931575 ACB335_RS05000 WP_021733235.1 962510..963580(-) (xerS) [Streptococcus pyogenes strain Isolate 4]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTKAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=931575 ACB335_RS05000 WP_021733235.1 962510..963580(-) (xerS) [Streptococcus pyogenes strain Isolate 4]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGAAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCCTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.618

100

0.806