Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   U6C02_RS17685 Genome accession   NZ_CP143843
Coordinates   3574359..3574823 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain YM-3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3569359..3579823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS17660 (U6C02_17660) - 3569872..3570417 (-) 546 Protein_3415 hypothetical protein -
  U6C02_RS17665 (U6C02_17665) fadH 3570528..3571292 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  U6C02_RS17670 (U6C02_17670) - 3571436..3572299 (+) 864 WP_069473382.1 metallophosphoesterase -
  U6C02_RS17675 (U6C02_17675) - 3572374..3572868 (+) 495 WP_088037173.1 L,D-transpeptidase family protein -
  U6C02_RS17680 (U6C02_17680) - 3572944..3574236 (+) 1293 WP_069473381.1 MFS transporter -
  U6C02_RS17685 (U6C02_17685) kre 3574359..3574823 (+) 465 WP_003154622.1 YkyB family protein Regulator
  U6C02_RS17690 (U6C02_17690) cheV 3574866..3575777 (-) 912 WP_014304917.1 chemotaxis protein CheV -
  U6C02_RS17695 (U6C02_17695) - 3575966..3576127 (+) 162 WP_007409608.1 hypothetical protein -
  U6C02_RS17700 (U6C02_17700) - 3576328..3577508 (+) 1181 Protein_3423 aminotransferase A -
  U6C02_RS17705 (U6C02_17705) - 3577524..3579344 (-) 1821 WP_003154628.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=931540 U6C02_RS17685 WP_003154622.1 3574359..3574823(+) (kre) [Bacillus velezensis strain YM-3]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=931540 U6C02_RS17685 WP_003154622.1 3574359..3574823(+) (kre) [Bacillus velezensis strain YM-3]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929