Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   U6C02_RS17585 Genome accession   NZ_CP143843
Coordinates   3558366..3558962 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain YM-3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3553366..3563962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS17560 (U6C02_17560) mobB 3553742..3554263 (-) 522 WP_003154581.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  U6C02_RS17565 (U6C02_17565) glp 3554224..3555516 (-) 1293 WP_052585820.1 gephyrin-like molybdotransferase Glp -
  U6C02_RS17570 (U6C02_17570) - 3555534..3556553 (-) 1020 WP_032874747.1 molybdopterin-synthase adenylyltransferase MoeB -
  U6C02_RS17575 (U6C02_17575) - 3556605..3557207 (-) 603 WP_015388303.1 molybdenum cofactor guanylyltransferase -
  U6C02_RS17580 (U6C02_17580) - 3557353..3558345 (+) 993 WP_003154589.1 hypothetical protein -
  U6C02_RS17585 (U6C02_17585) rok 3558366..3558962 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  U6C02_RS17590 (U6C02_17590) - 3559414..3559872 (-) 459 WP_024085241.1 TlpA disulfide reductase family protein -
  U6C02_RS17595 (U6C02_17595) - 3560160..3560966 (+) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  U6C02_RS17600 (U6C02_17600) - 3561000..3561245 (-) 246 WP_003154596.1 YkuS family protein -
  U6C02_RS17605 (U6C02_17605) - 3561306..3562430 (-) 1125 WP_069473384.1 N-acetyldiaminopimelate deacetylase -
  U6C02_RS17610 (U6C02_17610) dapD 3562501..3563211 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  U6C02_RS17615 (U6C02_17615) - 3563293..3563748 (-) 456 WP_024085239.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=931539 U6C02_RS17585 WP_003154591.1 3558366..3558962(-) (rok) [Bacillus velezensis strain YM-3]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=931539 U6C02_RS17585 WP_003154591.1 3558366..3558962(-) (rok) [Bacillus velezensis strain YM-3]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843