Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   U6C02_RS17475 Genome accession   NZ_CP143843
Coordinates   3538184..3538468 (-) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain YM-3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3533184..3543468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS17455 (U6C02_17455) ade 3533290..3535023 (-) 1734 WP_003154552.1 adenine deaminase -
  U6C02_RS17460 (U6C02_17460) ktrC 3535172..3535837 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  U6C02_RS17465 (U6C02_17465) - 3535878..3536705 (-) 828 WP_025851463.1 gamma-glutamylcyclotransferase -
  U6C02_RS17470 (U6C02_17470) - 3536707..3538011 (-) 1305 WP_014304932.1 ATP-binding protein -
  U6C02_RS17475 (U6C02_17475) abrB 3538184..3538468 (-) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  U6C02_RS17480 (U6C02_17480) mreBH 3538737..3539744 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  U6C02_RS17485 (U6C02_17485) - 3539816..3539950 (+) 135 WP_003154559.1 protein YkpC -
  U6C02_RS17490 (U6C02_17490) - 3540051..3541283 (+) 1233 WP_327961831.1 aminopeptidase -
  U6C02_RS17495 (U6C02_17495) - 3541313..3542221 (-) 909 WP_025851471.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=931538 U6C02_RS17475 WP_024085249.1 3538184..3538468(-) (abrB) [Bacillus velezensis strain YM-3]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=931538 U6C02_RS17475 WP_024085249.1 3538184..3538468(-) (abrB) [Bacillus velezensis strain YM-3]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGTAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543