Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   U6C02_RS16070 Genome accession   NZ_CP143843
Coordinates   3148881..3149315 (-) Length   144 a.a.
NCBI ID   WP_003154085.1    Uniprot ID   -
Organism   Bacillus velezensis strain YM-3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3143881..3154315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS16035 (U6C02_16035) - 3143895..3144248 (+) 354 WP_003154073.1 DMT family transporter -
  U6C02_RS16040 (U6C02_16040) - 3144262..3144714 (-) 453 WP_015388205.1 OsmC family protein -
  U6C02_RS16045 (U6C02_16045) - 3144775..3145482 (-) 708 WP_003154076.1 poly-gamma-glutamate hydrolase family protein -
  U6C02_RS16050 (U6C02_16050) - 3145738..3145971 (-) 234 WP_025851162.1 hypothetical protein -
  U6C02_RS16055 (U6C02_16055) - 3146150..3147478 (+) 1329 WP_024085327.1 S8 family peptidase -
  U6C02_RS16060 (U6C02_16060) - 3147671..3148033 (+) 363 WP_154303119.1 hypothetical protein -
  U6C02_RS16065 (U6C02_16065) - 3148054..3148821 (-) 768 WP_025851167.1 YoaK family protein -
  U6C02_RS16070 (U6C02_16070) nucA/comI 3148881..3149315 (-) 435 WP_003154085.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  U6C02_RS16075 (U6C02_16075) - 3149604..3150815 (+) 1212 WP_154303121.1 cytochrome P450 family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15509.42 Da        Isoelectric Point: 6.8606

>NTDB_id=931533 U6C02_RS16070 WP_003154085.1 3148881..3149315(-) (nucA/comI) [Bacillus velezensis strain YM-3]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAAHAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=931533 U6C02_RS16070 WP_003154085.1 3148881..3149315(-) (nucA/comI) [Bacillus velezensis strain YM-3]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCATGCTGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAACAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCATCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGCTATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486