Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | U6C02_RS12710 | Genome accession | NZ_CP143843 |
| Coordinates | 2442734..2443771 (+) | Length | 345 a.a. |
| NCBI ID | WP_014305414.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain YM-3 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2437734..2448771
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U6C02_RS12690 (U6C02_12690) | - | 2438219..2439049 (+) | 831 | WP_025852928.1 | STAS domain-containing protein | - |
| U6C02_RS12695 (U6C02_12695) | - | 2439088..2440389 (-) | 1302 | WP_014305416.1 | hemolysin family protein | - |
| U6C02_RS12700 (U6C02_12700) | - | 2440535..2441485 (+) | 951 | WP_003153082.1 | magnesium transporter CorA family protein | - |
| U6C02_RS12705 (U6C02_12705) | comGA | 2441677..2442747 (+) | 1071 | WP_057080484.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| U6C02_RS12710 (U6C02_12710) | comGB | 2442734..2443771 (+) | 1038 | WP_014305414.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| U6C02_RS12715 (U6C02_12715) | comGC | 2443776..2444084 (+) | 309 | WP_003153087.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| U6C02_RS12720 (U6C02_12720) | comGD | 2444074..2444511 (+) | 438 | WP_072588444.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| U6C02_RS12725 (U6C02_12725) | comGE | 2444495..2444809 (+) | 315 | WP_015388003.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| U6C02_RS12730 (U6C02_12730) | comGF | 2444718..2445218 (+) | 501 | WP_226565836.1 | competence type IV pilus minor pilin ComGF | - |
| U6C02_RS12735 (U6C02_12735) | comGG | 2445219..2445596 (+) | 378 | WP_014305410.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| U6C02_RS12740 (U6C02_12740) | - | 2445653..2445832 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| U6C02_RS12745 (U6C02_12745) | - | 2445872..2446201 (-) | 330 | WP_003153097.1 | DUF3889 domain-containing protein | - |
| U6C02_RS12750 (U6C02_12750) | tapA | 2446460..2447131 (+) | 672 | WP_003153099.1 | amyloid fiber anchoring/assembly protein TapA | - |
| U6C02_RS12755 (U6C02_12755) | sipW | 2447103..2447687 (+) | 585 | WP_003153100.1 | signal peptidase I SipW | - |
| U6C02_RS12760 (U6C02_12760) | tasA | 2447751..2448536 (+) | 786 | WP_003153102.1 | biofilm matrix protein TasA | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39604.88 Da Isoelectric Point: 9.5658
>NTDB_id=931523 U6C02_RS12710 WP_014305414.1 2442734..2443771(+) (comGB) [Bacillus velezensis strain YM-3]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYEVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGDLLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPYYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYEVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGDLLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPYYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=931523 U6C02_RS12710 WP_014305414.1 2442734..2443771(+) (comGB) [Bacillus velezensis strain YM-3]
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCAGGCTGAGGGAAGGTGATGCGTTTTACGAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGACTTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCGCCGCAAGATAAAATGCTCATTGTTGTGAAAATACCCCTCTTGGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTATTATGAAAAAGATCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCAGGCTGAGGGAAGGTGATGCGTTTTACGAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGACTTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCGCCGCAAGATAAAATGCTCATTGTTGTGAAAATACCCCTCTTGGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTATTATGAAAAAGATCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
65.325 |
93.623 |
0.612 |