Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   U6C02_RS12450 Genome accession   NZ_CP143843
Coordinates   2397049..2397816 (+) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain YM-3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2392049..2402816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS12420 (U6C02_12420) - 2392332..2394464 (+) 2133 WP_025852966.1 HD family phosphohydrolase -
  U6C02_RS12425 (U6C02_12425) ybeY 2394465..2394938 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  U6C02_RS12430 (U6C02_12430) - 2394919..2395293 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  U6C02_RS12435 (U6C02_12435) - 2395417..2395827 (+) 411 WP_003152976.1 cytidine deaminase -
  U6C02_RS12440 (U6C02_12440) era 2395808..2396713 (+) 906 WP_003152978.1 GTPase Era -
  U6C02_RS12445 (U6C02_12445) - 2396869..2397012 (+) 144 WP_007408286.1 YqzL family protein -
  U6C02_RS12450 (U6C02_12450) recO 2397049..2397816 (+) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  U6C02_RS12455 (U6C02_12455) glyQ 2398118..2399005 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  U6C02_RS12460 (U6C02_12460) glyS 2398998..2401037 (+) 2040 WP_330942337.1 glycine--tRNA ligase subunit beta -
  U6C02_RS12465 (U6C02_12465) ccpN 2401138..2401776 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  U6C02_RS12470 (U6C02_12470) - 2401802..2402614 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=931521 U6C02_RS12450 WP_003152982.1 2397049..2397816(+) (recO) [Bacillus velezensis strain YM-3]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=931521 U6C02_RS12450 WP_003152982.1 2397049..2397816(+) (recO) [Bacillus velezensis strain YM-3]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894